Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,370,935 – 6,371,030 |
Length | 95 |
Max. P | 0.500000 |
Location | 6,370,935 – 6,371,030 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.91 |
Mean single sequence MFE | -22.56 |
Consensus MFE | -14.85 |
Energy contribution | -15.38 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.04 |
Mean z-score | -1.24 |
Structure conservation index | 0.66 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6370935 95 - 27905053 -----------UCC--CAACU----U---UG--UUGUCCUCGUGAAUUAUGCAUGCAACAAAUUGUAUAAAAAUUUCUGCAACUUUACGU---UGUUACGUGCAGAAAUUUGGAAAUCAA -----------(((--(((.(----(---((--((((...((((...))))...))))))))))).....((((((((((......((((---....)))))))))))))))))...... ( -22.20) >DroPse_CAF1 133600 101 - 1 C----UGC---UGC--CUGCC----U---CGUCUGGUGCUCGUGAAUUAUGCAUGCAACAAAUUGUAUAAAAAUUUCUGCAACUUUACGU---GGUUACGUGCAGAAAUUUGGAAAUCAA (----(((---...--..(((----.---(((..(((((....((((((((((..........)))))))....))).)).)))..))).---))).....))))............... ( -22.30) >DroGri_CAF1 173044 114 - 1 UCACUUGAUGCGCCCGAAUCC----UGCCGA--UUGUCCUGCUGAAUUAUGCAUGCAACAAAUUGUAUAAAAAUUUGUGCAACUUUACGUAGUAGUUACGUGCCGAAAUUUGGAAAUCAA .....((((....((((((..----.((((.--.....((((((.........((((.((((((.......))))))))))........))))))...)).))....))))))..)))). ( -21.73) >DroWil_CAF1 229252 99 - 1 C----------UGU--UAUCC----UGCCGA--UUGUCCUCCUGAAUUAUGCAUGCAACAAAUUGUAUAAAAAUUUCUGCAACUUUAUGU---AGUUACGUGCAGAAAUUUGGAAAUCAA .----------...--.....----....((--((.(((.......(((((((..........)))))))((((((((((((((......---)))....)))))))))))))))))).. ( -22.30) >DroAna_CAF1 135888 101 - 1 -----------ACCCGCAACUCCAGU---UG--UUGUCCUCCUGAAUUAUGCAUGCAACAAAUUGUAUAAAAAUUUCUGCAACUUUACGU---UGCGACGUGAAGAAAUUUGGGAAUCAA -----------....(((((....))---))--).....(((..((((.....((((..(((((.......))))).)))).((((((((---....)))))))).))))..)))..... ( -24.50) >DroPer_CAF1 140770 101 - 1 C----UGC---UGC--CUGCC----U---CGUCUGGUGCUCGUGAAUUAUGCAUGCAACAAAUUGUAUAAAAAUUUCUGCAACUUUACGU---GGUUACGUGCAGAAAUUUGGAAAUCAA (----(((---...--..(((----.---(((..(((((....((((((((((..........)))))))....))).)).)))..))).---))).....))))............... ( -22.30) >consensus C__________UCC__CAACC____U___CG__UUGUCCUCCUGAAUUAUGCAUGCAACAAAUUGUAUAAAAAUUUCUGCAACUUUACGU___AGUUACGUGCAGAAAUUUGGAAAUCAA ..........................................(((.(((((((..........)))))))(((((((((((.....((......))....))))))))))).....))). (-14.85 = -15.38 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:44 2006