Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,369,436 – 6,369,530 |
Length | 94 |
Max. P | 0.609999 |
Location | 6,369,436 – 6,369,530 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 91.84 |
Mean single sequence MFE | -21.15 |
Consensus MFE | -17.94 |
Energy contribution | -18.13 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.04 |
Mean z-score | -1.64 |
Structure conservation index | 0.85 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.609999 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6369436 94 - 27905053 GGGAAAUGCGGAGCUGAGAAGUUGGAGUAGCAGAAGGAUAUCCAUUUGCCAAAAUAGCAAAACUUGCAUAAAAACUUUUGCGCAACAACUUGGA .............(..((..((((.....(((((.((....)).))))).......((((((.((.......)).)))))).))))..))..). ( -20.40) >DroSec_CAF1 133872 94 - 1 GGGAAAUGCGGAGCUGAGAAGUUGGAGUAGCAGAAGGAUAUCCAUUUGCCAAAAUAGCAAAACUUGCAUAAAAACUUUUGCGCAACAACUUGGA .............(..((..((((.....(((((.((....)).))))).......((((((.((.......)).)))))).))))..))..). ( -20.40) >DroSim_CAF1 157087 94 - 1 GGGAAAUGCGGAGCUGAGAAGUUGGAGUAGCAGAAGGAUAUCCAUUUGCCAAAAUAGCAAAACUUGCAUAAAAACUUUUGCGCAACAACUUGGA .............(..((..((((.....(((((.((....)).))))).......((((((.((.......)).)))))).))))..))..). ( -20.40) >DroEre_CAF1 145194 89 - 1 GGGAAAAGCGG-----AGUAGUUGGAGUUGCAGAAGGAUAUCCAUUUGCCAAAAUAGCAAAACUUGCAUAAAAACUUUUGCGCAACAACUUGGA ........(.(-----(((.((((.....(((((.((....)).))))).......((((((.((.......)).)))))).)))).)))).). ( -20.60) >DroYak_CAF1 135394 89 - 1 GGGAAAAGCGG-----AGAAGUUGGAGUGGCAGAAGGAUAUCCAUUUGCCAAAAUAGCAAAACUUGCAUAAAAACUUUUGCGCAACAACUUGGA .......(((.-----(((((((....(((((((.((....)).))))))).....(((.....))).....))))))).)))........... ( -26.70) >DroAna_CAF1 134419 85 - 1 AGU-----CGG----GGGAGUUUGGAGUAGCAGAAGGAUAUCCAUUUGCCAAAAUAGCAAAACUUGCAUAAAAACUUUUGCGCAACAACUUGGA .(.-----((.----((((((((......(((((.((....)).))))).......(((.....)))....)))))))).)))........... ( -18.40) >consensus GGGAAAUGCGG____GAGAAGUUGGAGUAGCAGAAGGAUAUCCAUUUGCCAAAAUAGCAAAACUUGCAUAAAAACUUUUGCGCAACAACUUGGA ..................((((((..((.(((((.((....)).))))).......((((((.((.......)).))))))))..))))))... (-17.94 = -18.13 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:43 2006