Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,369,060 – 6,369,165 |
Length | 105 |
Max. P | 0.991114 |
Location | 6,369,060 – 6,369,165 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 91.90 |
Mean single sequence MFE | -26.34 |
Consensus MFE | -24.92 |
Energy contribution | -25.20 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.08 |
Mean z-score | -1.69 |
Structure conservation index | 0.95 |
SVM decision value | 2.25 |
SVM RNA-class probability | 0.991114 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6369060 105 - 27905053 GCCAACAUGGCGAACAAAAGUUUUGCUCGCUGCGGCAAAAAGCGGAAAUGCAUUCAAAAUCUAAUAUGGCAGCCAUGGUCAUGAGCAGCAGCAACAACAACAG------CA (((.....)))........((((((((.(((((........(((....))).............((((((.......)))))).)))))))))).))).....------.. ( -28.10) >DroSec_CAF1 133496 105 - 1 GCCAACAUGGCGAACAAAAGUUUAGCUCGCUGCGGCAAAAAGCGGAAAUGCAUUCAAAAUCUAAUAUGGCAGCCAUGGUCAUGAGCAGCAGCAACAACAACAA------CG (((.....)))((((....)))).(((.(((((........(((....))).............((((((.......)))))).))))))))...........------.. ( -25.70) >DroSim_CAF1 156711 105 - 1 GCCAACAUGGCGAACAAAAGUUUUGCUCGCUGCGGCAAAAAGCGGAAAUGCAUUCAAAAUCUAAUAUGGCAGCCAUGGUCAUGAGCAGCAGCAACAACAGCAA------CG (((.....)))........((((((((.(((((........(((....))).............((((((.......)))))).)))))))))).))).....------.. ( -28.10) >DroAna_CAF1 134000 99 - 1 GCCAACAUGGCGAACAAAAGUUUUGCUCGCUGCGGCAAAAAGCGGAAAUGCAUUCAAAAUCUAAUAUGGCAGCCAUGGUCAUGAGCAGCAACAACAACU------------ (((.....)))........(((((((((((..(.((.....)).)....))..............(((((.......))))))))))).))).......------------ ( -22.80) >DroPer_CAF1 138898 111 - 1 ACCAACAUGGCGAACAAAAGUUUUGCUCGCUGCGGCAAAAAGCGGAAAUGCAUUCAAAAUCUAAUAUGGCAGCCAUGGUCAUGAGCAGCAGCAGCAGCAGGAACAACAACU .((.....)).........((((((((.(((((.((.....(((....))).............((((((.......))))))....)).))))))))).))))....... ( -27.00) >consensus GCCAACAUGGCGAACAAAAGUUUUGCUCGCUGCGGCAAAAAGCGGAAAUGCAUUCAAAAUCUAAUAUGGCAGCCAUGGUCAUGAGCAGCAGCAACAACAACAA______CG (((.....)))........((((((((.(((((........(((....))).............((((((.......)))))).)))))))))).)))............. (-24.92 = -25.20 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:42 2006