Locus 2242

Sequence ID 3R_DroMel_CAF1
Location 6,368,186 – 6,368,282
Length 96
Max. P 0.981233
window3637

overview

Window 7

Location 6,368,186 – 6,368,282
Length 96
Sequences 4
Columns 106
Reading direction forward
Mean pairwise identity 77.06
Mean single sequence MFE -16.41
Consensus MFE -10.44
Energy contribution -10.50
Covariance contribution 0.06
Combinations/Pair 1.08
Mean z-score -2.31
Structure conservation index 0.64
SVM decision value 1.88
SVM RNA-class probability 0.981233
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6368186 96 + 27905053
CCAUCACGACGGCUUUUCCAUU-UCCCAUC--------CAUUUCCACCAGCCCCUCCCACUCCAUCAUUAUGUGCUGACGGCGUAAAUGGCUCUAUCAGCA-CAUU
..........((((........-.......--------..........)))).................(((((((((..(.((.....)).)..))))))-))). ( -18.21)
>DroSec_CAF1 132610 96 + 1
CCAUCUCGACGGCUUUUCCAUU-UCCCAUC--------CAUUUCCACCAGCCCCUCCCACUCCAUCAUUAUGUGCUGACGGCGUAAAUGGCUCUAUCAGCA-CAUU
..........((((........-.......--------..........)))).................(((((((((..(.((.....)).)..))))))-))). ( -18.21)
>DroSim_CAF1 155833 96 + 1
CCUUCUCGACGGCUUUUCCAUU-UCCCAUC--------CAUUUCCACCAGCCCCUCCCACUCCAUCAUUAUGUGCUGACGGCGUAAAUGGCUCUAUCAGCA-CAUU
..........((((........-.......--------..........)))).................(((((((((..(.((.....)).)..))))))-))). ( -18.21)
>DroWil_CAF1 226713 94 + 1
------CUCUCAUUCUCCCACAACCCUAUCCCUAUCGUUAUUGUCAUCAUCG------CCAUCAUCAUUAUGUGCUGACGUCGUAAAUGGCUCUAUCAGCGCCAUU
------.............................((....(((((.....(------((((.......))).))))))).))..((((((.(.....).)))))) ( -11.00)
>consensus
CCAUCUCGACGGCUUUUCCAUU_UCCCAUC________CAUUUCCACCAGCCCCUCCCACUCCAUCAUUAUGUGCUGACGGCGUAAAUGGCUCUAUCAGCA_CAUU
.....................................................................(((((((((.((.((.....)).)).)))))).))). (-10.44 = -10.50 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:41 2006