Locus 2241

Sequence ID 3R_DroMel_CAF1
Location 6,367,827 – 6,367,941
Length 114
Max. P 0.860625
window3636

overview

Window 6

Location 6,367,827 – 6,367,941
Length 114
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 94.39
Mean single sequence MFE -19.73
Consensus MFE -18.85
Energy contribution -18.85
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.06
Structure conservation index 0.96
SVM decision value 0.83
SVM RNA-class probability 0.860625
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6367827 114 + 27905053
UCAGUUUUCUUUUGAAUGAUUCGAUGAUUUUAAGCGCCUGCGUUAUAUGAAAACCAAUCGCAUCAAAGCACCCCAUUAAAUUUCAUCGUCAGGCAUAUAUCCUUGCCGCACACA------
((((.......)))).(((..((((((.((((((((....))))...............((......)).......))))..)))))))))((((........)))).......------ ( -19.60)
>DroGri_CAF1 169938 117 + 1
UCACUUUUCUUUUGAAUGAUUCGAUGAUUUUAAGCGCCUGCGUUAUAUGAAAACCAAUCGCAUCAAAGCACCCCAUUAAAUUUCAUCGUCAGGCAUAUAUCCUUGCCACAAACUCAC---
..........((((..(((..((((((.((((((((....))))...............((......)).......))))..)))))))))((((........)))).)))).....--- ( -20.10)
>DroEre_CAF1 143608 120 + 1
UCAGUUUUCUUUUGAAUGAUUCGAUGAUUUUAAGCGCCUGCGUUAUAUGAAAACCAAUCGCAUCAAAGCACCCCAUUAAAUUUCAUCGUCAGGCAUAUAUCCUUGCCGCACACACACACA
((((.......)))).(((..((((((.((((((((....))))...............((......)).......))))..)))))))))((((........))))............. ( -19.60)
>DroWil_CAF1 226331 120 + 1
UCACUUUUCUUUUGAAUGAUUCGAUGAUUUUAAGCGCCUGCGUUAUAUGAAAACCAAUCGCAUCAAAGCACCCCAUUAAAUUUCAUCGUCAGGCAUAUAUCCUUGCCACACACAGACACC
..........((((..(((..((((((.((((((((....))))...............((......)).......))))..)))))))))((((........)))).....)))).... ( -20.20)
>DroMoj_CAF1 187521 117 + 1
UCACUUUUCUUUUGAAUGAUUCGAUGAUUUUAAGCGCCUGCGUUAUAUGAAAACCAAUCGCAUCAAAGCACCCCAUUAAAUUUCAUCGUCAGGCAUAUAUCCUUGCCACAAAUACAC---
..........((((..(((..((((((.((((((((....))))...............((......)).......))))..)))))))))((((........)))).)))).....--- ( -20.20)
>DroAna_CAF1 132803 116 + 1
UCAGUUUUCUUUUGAAUGAUUCGAUGAUUUUAAGCGCCUGCGUUAUAUGAAAACCAAUCGCAUCAAAGCACCCCAUUAAAUUUCAUCGUCAGGCAUAUAUCCUUGCCCCUUAUACU----
((((.......)))).(((..((((((.((((((((....))))...............((......)).......))))..)))))))))((((........)))).........---- ( -18.70)
>consensus
UCACUUUUCUUUUGAAUGAUUCGAUGAUUUUAAGCGCCUGCGUUAUAUGAAAACCAAUCGCAUCAAAGCACCCCAUUAAAUUUCAUCGUCAGGCAUAUAUCCUUGCCACACACACAC___
................(((..((((((.((((((((....))))...............((......)).......))))..)))))))))((((........))))............. (-18.85 = -18.85 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:40 2006