Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,364,890 – 6,364,989 |
Length | 99 |
Max. P | 0.613594 |
Location | 6,364,890 – 6,364,989 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 82.36 |
Mean single sequence MFE | -20.03 |
Consensus MFE | -13.19 |
Energy contribution | -13.63 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.20 |
Mean z-score | -1.84 |
Structure conservation index | 0.66 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.613594 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6364890 99 + 27905053 UUUUAAUUUAAAUGAAAAAGCUUUUCGCGCAUAGUUAUGAAAAUAAUGGCUGCCAA----AAAAGGGGAAUAUUCCAUAUACAUAUAUGU--GUGUAUAGAGCAU-- ...................(((((.(((((((((((((....))))).....((..----....))(((....))).........)))))--)))...)))))..-- ( -20.70) >DroPse_CAF1 127321 87 + 1 UUUCAAUUUAAAUGAAAAAGCUUUUCGCGCAUAGUUAUAAAAAUAAUGGCUGCAACUCAACGAAAGAGA------------------CAG--GCAAACGGAGCAGAA (((((.......)))))..((((.((((((...(((((....))))).)).)).......(....).))------------------.))--))............. ( -14.00) >DroSec_CAF1 129387 93 + 1 UUUUAAUUUAAAUGAAAAAGCUUUUCGCG--UAGUUAUGAAAAUAAUGGCUGCCAA----AAAGGGAGAAUAUUCCGUAU----AUAUGU--GUGUAUGGAGCAU-- ....................(((((.(.(--(((((((.......))))))))).)----))))........((((((((----((....--))))))))))...-- ( -20.30) >DroSim_CAF1 144099 95 + 1 UUUUAAUUUAAAUGAAAAAGCUUUUCGCGCAUAGUUAUGAAAAUAAUGGCUGCCAA----AAAGGGGGAAUAUUCCGUAU----AUAUGU--GUGUAUGGAGCAU-- ...................(((((.(((((((((((((....)))))..((.((..----...)).))............----.)))))--)))...)))))..-- ( -21.60) >DroEre_CAF1 140734 95 + 1 UUUUAAUUUAAAUGAAAAAGCUUUUCGCGCAUAGUUAUGAAAAUAAUGGCUGCCAA----AAAGGGGGGAUAUUCCAUAU----AUAUGU--GUGUAUAAAGCAU-- ...................(((((.(((((((((((((....)))))..((.((..----...)).))............----.)))))--)))...)))))..-- ( -21.80) >DroYak_CAF1 130837 97 + 1 UUUUAAUUUAAAUGAAAAAGCUUUUCGCGCAUAGUUAUGAAAAUAAUGGCUGCCAA----AAAGGGGGGAUAUUCCAUAU----AUAUGUGUGUGUAUAAAGCAU-- ...................(((((.(((((((((((((....)))))..((.((..----...)).))............----...))))))))...)))))..-- ( -21.80) >consensus UUUUAAUUUAAAUGAAAAAGCUUUUCGCGCAUAGUUAUGAAAAUAAUGGCUGCCAA____AAAGGGGGAAUAUUCCAUAU____AUAUGU__GUGUAUAGAGCAU__ ...................(((((..((((.(((((((.......)))))))............((((....))))................))))..))))).... (-13.19 = -13.63 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:39 2006