Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 904,443 – 904,551 |
Length | 108 |
Max. P | 0.950675 |
Location | 904,443 – 904,551 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 79.04 |
Mean single sequence MFE | -22.53 |
Consensus MFE | -12.69 |
Energy contribution | -14.12 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.09 |
Mean z-score | -2.55 |
Structure conservation index | 0.56 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950675 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 904443 108 + 27905053 AUCAAUUUGUUUAGCUGGCUAAUUUCGCUUACUCGCUGGCUUUUGUUUUUGGAUAUCGAUUUGUUUU-UUGUAAGUCACAAUACGGUUGGCUAAUGCAAGUUUAUGUAC ...((((((((((((..(((......((......))((((((........(((((......))))).-....))))))......)))..))))).)))))))....... ( -22.52) >DroPse_CAF1 76185 85 + 1 AUCAAUUUGUUUAGCUGGCUAAUUU-----------UCGCUUUUGCUUUU------------GUUU-GUUGUAAGUCACAAUAUGGUUGGCUAAUGCAAGUUUAUGUGU ...((((((((((((..((((....-----------..((....))....------------...(-(((((.....))))))))))..))))).)))))))....... ( -21.80) >DroYak_CAF1 6754 97 + 1 AUCAAUAUAUUUAGCUGGCCAAUUU------CUCGUUGGCUUUUUGUUUUGGAU------UUGUUUUGUUUUAAGUCACAAUACGGUUGGCUAAUGCAAGCUUAUGUAC .....(((((..((((.((......------...(((((((..((((.((((((------(((........)))))).))).))))..))))))))).)))).))))). ( -24.00) >DroPer_CAF1 76108 85 + 1 AUCAAUUUGUUUAGCUGGCUAAUUU-----------UCGCUUUUGCUUUU------------GUUU-GUUGUAAGUCACAAUAUGGUUGGCUAAUGCAAGUUUAUGUGU ...((((((((((((..((((....-----------..((....))....------------...(-(((((.....))))))))))..))))).)))))))....... ( -21.80) >consensus AUCAAUUUGUUUAGCUGGCUAAUUU___________UCGCUUUUGCUUUU____________GUUU_GUUGUAAGUCACAAUACGGUUGGCUAAUGCAAGUUUAUGUAC ...((((((((((((..(((..................((....)).....................(((((.....)))))..)))..))))).)))))))....... (-12.69 = -14.12 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:06 2006