Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,363,185 – 6,363,282 |
Length | 97 |
Max. P | 0.538000 |
Location | 6,363,185 – 6,363,282 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 97.73 |
Mean single sequence MFE | -20.65 |
Consensus MFE | -20.10 |
Energy contribution | -20.10 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -0.68 |
Structure conservation index | 0.97 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.538000 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6363185 97 - 27905053 AGCGUUGGCGUUUGCGCCUUGCAGUCGCUGGCAAGUGAUAAAUCAUUUCAACUGUCACUUUCGAAACACAAUUUUAUCUAAACACAGACACACAGAA ...((..(((.((((.....)))).)))..))((((((((............))))))))..................................... ( -20.10) >DroSec_CAF1 127667 97 - 1 AGCGUUGGCGUUUGCGCCUUGCAGUCGCUGGCAAGUGAUAAAUCAUUUCAACUGUCACUUUCGAAACACAAUUUUAUCUAAACACAGACACACAGAA ...((..(((.((((.....)))).)))..))((((((((............))))))))..................................... ( -20.10) >DroSim_CAF1 141362 97 - 1 AGCGUUGGCGUUUGCGCCUUGCAGUCGCUGGCAAGUGAUAAAUCAUUUCAACUGUCACUUUCGAAACACAAUUUUAUCUAAACACAGACACACAGAA ...((..(((.((((.....)))).)))..))((((((((............))))))))..................................... ( -20.10) >DroEre_CAF1 138862 95 - 1 GGCGUUGGCGUUUGCGCCUUGCAGUCGCUGGCAAGUGAUAAAUCAUUUCAACUGUCACUUUCGAAACACAAUUUUAUCUAAACACAGAC--ACAGAA ...((..(((.((((.....)))).)))..))((((((((............)))))))).............................--...... ( -20.10) >DroYak_CAF1 129000 97 - 1 AGCGUUGGCGUUUGCGCCUUGCAGUCGCUGGCAAGUGAUAAAUCAUUUCAACUGUCACUUUCGAAACACAAUUUUAUCUAAACACAGACACACAGAA ...((..(((.((((.....)))).)))..))((((((((............))))))))..................................... ( -20.10) >DroAna_CAF1 128173 97 - 1 GGCGUUGGCGUUUGCGCCUUGCAGUCGCUGGCAAGUGAUAAAUCAUUUCAACUGUCACUUUCGAAACACAAUUUUAUCUAAACGCAGACACAGAGAC .(.(((.(((((((.(((..((....)).)))((((((((............))))))))..................))))))).))).)...... ( -23.40) >consensus AGCGUUGGCGUUUGCGCCUUGCAGUCGCUGGCAAGUGAUAAAUCAUUUCAACUGUCACUUUCGAAACACAAUUUUAUCUAAACACAGACACACAGAA ...((..(((.((((.....)))).)))..))((((((((............))))))))..................................... (-20.10 = -20.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:36 2006