Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,361,888 – 6,361,983 |
Length | 95 |
Max. P | 0.971556 |
Location | 6,361,888 – 6,361,983 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 78.42 |
Mean single sequence MFE | -15.04 |
Consensus MFE | -7.89 |
Energy contribution | -8.30 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.20 |
Mean z-score | -2.82 |
Structure conservation index | 0.52 |
SVM decision value | 1.68 |
SVM RNA-class probability | 0.971556 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6361888 95 + 27905053 AUCAAUAAGGCCAACAAAGCUAAUUCGCU-------UCGCUUUAACUGGCCACAA-GCAAAAAACAAAAA-CUUGAA-AAUGCCACAAGUUAUAUAUUAUUUUAA ...((((((((((..(((((.........-------..)))))...)))))....-............((-((((..-.......)))))).....))))).... ( -15.90) >DroGri_CAF1 162191 86 + 1 AUCAAUAAA-UUGACAAA---AAUGCGCGCGCCUUUUAACUUUAACAAGCGCCAAAA-----ACCAAAUC---AAAA-AAUAACAUAAAGAAAAUAUU-----U- .((((....-))))....---..((.((((..................))))))...-----........---....-....................-----.- ( -6.87) >DroSec_CAF1 126363 96 + 1 AUCAAUAAGGCCAACAAAGCUAAUUCGCU-------UCGCUUUAACUGGCCACAA-GCAAAAAACAAAAAGCUUGAA-AAUGCCACAAAAUAUAUAUUAUUUUAA ........(((((..(((((.........-------..)))))...))))).(((-((............)))))..-........((((((.....)))))).. ( -18.40) >DroSim_CAF1 140060 96 + 1 AUCAAUAAGGCCAACAAAGCUAAUUCGCU-------UCGCUUUAACUGGCCACAA-GCAAAAAACAAAAAGCUUGAA-AAUGCCACAAAAUAUAUGUUAUUUUAA ........(((((..(((((.........-------..)))))...))))).(((-((............)))))..-........((((((.....)))))).. ( -18.40) >DroEre_CAF1 137682 96 + 1 AUCAAUAAGGCCAACAAAGCCAAUUCGCU-------UCGCUUUAACUGGCCACAA-ACAAGAAA-AAAAAGCUUGAAAAAUGCCACAAAAUAUAUAUUAUUUAAA ........(((((..(((((.((.....)-------).)))))...)))))....-.((((...-......))))............(((((.....)))))... ( -13.90) >DroYak_CAF1 127812 98 + 1 AUCAAUAAGGCCAACAAAGCAAAUUCGCU-------UCGCUUUAACUGGCCACAAAACAAGAGACAAAACGCUUGAAAAAUGCCACAAAAUAUGUAUUAUUUUAA ........(((((..(((((.........-------..)))))...)))))......((((.(......).)))).((((((..(((.....)))..)))))).. ( -16.80) >consensus AUCAAUAAGGCCAACAAAGCUAAUUCGCU_______UCGCUUUAACUGGCCACAA_ACAAAAAACAAAAAGCUUGAA_AAUGCCACAAAAUAUAUAUUAUUUUAA ........(((((..(((((..................)))))...)))))...................................................... ( -7.89 = -8.30 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:34 2006