Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,359,974 – 6,360,081 |
Length | 107 |
Max. P | 0.883496 |
Location | 6,359,974 – 6,360,081 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 95.33 |
Mean single sequence MFE | -28.93 |
Consensus MFE | -24.94 |
Energy contribution | -24.42 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.14 |
Mean z-score | -1.57 |
Structure conservation index | 0.86 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.883496 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6359974 107 - 27905053 UUCAGUUCGUUUGCCGAAAGGCUUAGGAACGCGGAAAAUUGAAUUAAUAAUUAUACGCGGUUUUCCCGCUGUGAUAACUAAGUAGUGAAGCGAUAAUUUACAGAGGG ....((((.(..(((....)))..).))))(((...(((((......)))))...)))......(((.((((((.......((......))......)))))).))) ( -29.82) >DroSec_CAF1 124496 107 - 1 UUCAGUUCGUUUGCCGAAAGGCUUAGGAACGCGGAAAAUUGAAUUAAUAAUUAUACGUGGUUUUCCCGCUGUGAUAACUAAGUAGUGGAGCGAUAAUUUACAGUGGG ....((((.(..(((....)))..).))))(((...(((((......)))))...)))......((((((((((.......((......))......)))))))))) ( -31.22) >DroSim_CAF1 138200 107 - 1 UUCAGUUCGUUUGCCGAAAGGCUUAGGAACGCGGAAAAUUGAAUUAAUAAUUAUACGUGGUUUUCCCGCUGUGAUAACUAAGUAGUGGAGCGAUAAUUUACAGAGGG ....((((.(..(((....)))..).))))(((...(((((......)))))...)))......(((.((((((.......((......))......)))))).))) ( -27.42) >DroEre_CAF1 135788 107 - 1 UUCAGUUCGUUUGCCGAAAGGCUUAGGAACGCGGAGAAUUGAAUUAAUAAUUAUACGUGGUUUUCCCGCCGUGAUAACUAAGUAGUGCAGCGAUAAUUUACAGCUCG ....((((.(..(((....)))..).))))...(((...(((((((..........((((.....))))(((....(((....)))...))).)))))))...))). ( -28.80) >DroYak_CAF1 125852 107 - 1 UUCAGUUCGUUUGCCGAAAGGCUUAGGAACGCGGAAAAUUGAAUUAAUAAUUAUACGUGCUUUUCCCGCCGCGAUAACUAAGUAGUGCAGCGAUAAUUUACAGGCGG ....((((.(..(((....)))..).))))(((...(((((......)))))...))).......(((((((....(((....)))...))(........).))))) ( -27.40) >consensus UUCAGUUCGUUUGCCGAAAGGCUUAGGAACGCGGAAAAUUGAAUUAAUAAUUAUACGUGGUUUUCCCGCUGUGAUAACUAAGUAGUGCAGCGAUAAUUUACAGAGGG (((.((((.(..(((....)))..).))))...)))...(((((((..........((((.....))))(((....(((....)))...))).)))))))....... (-24.94 = -24.42 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:33 2006