Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,358,258 – 6,358,356 |
Length | 98 |
Max. P | 0.545349 |
Location | 6,358,258 – 6,358,356 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 79.33 |
Mean single sequence MFE | -21.13 |
Consensus MFE | -12.42 |
Energy contribution | -12.53 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.06 |
Mean z-score | -1.59 |
Structure conservation index | 0.59 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.545349 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6358258 98 + 27905053 ACAUGUCCAAAGGCAAACCGCCAAAAGGAUAAUCAGCAACAAUUUAGUAUUAUUACACCACGUUUCGAAGCCAUCGAAA---AAGGG-UU----------------GGGGCUGGGGAA ...(((((...(((.....)))....))))).(((((..((((...(((....))).((...((((((.....))))))---..)))-))----------------)..))))).... ( -27.50) >DroVir_CAF1 131692 88 + 1 ACAUGUCCAAAGGCGAACCGCCAAAAGGAUAAUCAGCAACAAUUUAGUAUUAUUACACCACGU-UCGAAGCCAUCGAAGUCUAAGCC-CC---------------------------- ...(((((...((((...))))....)))))....((.........(((....)))......(-((((.....)))))......)).-..---------------------------- ( -15.30) >DroPse_CAF1 121008 95 + 1 ACAUAUCCAAAGGCAAACCGCCAAAAGGAUAAUCAGCAACAAUUUAGUAUUAUUACACCACGU-UCGAAGCCAUCGAAG---AAGCA-CC----------------CAAGCCCAAG-- ...(((((...(((.....)))....)))))....((.........(((....)))......(-((((.....))))).---..)).-..----------------..........-- ( -15.40) >DroGri_CAF1 157712 100 + 1 ACAUGUCCAAAGGCGAACCGCCAAAAGGAUAAUCAGCAACAAUUUAGUAUUAUUACACCACGU-UCGAACCCAUCGAAGUCUAAAGC-UU----------------AGAGCCGAGGGA ...(((((...((((...))))....)))))...............(((....))).......-.....(((.(((...((((....-.)----------------)))..)))))). ( -19.10) >DroWil_CAF1 214960 111 + 1 AGAUGUCCAAAGGCAAACCGCCAAAAGGAUAAUCAGCAACAAUUUAGUAUUAUUACACCACGU-UCGAAGCCAUCGAAA---GAAGCCCCCCAA---AAGAAGGGGGGGGCACAAGAG .(((((((...(((.....)))....)))).)))............(((....))).......-.....(((.((....---))..((((((..---.....)))))))))....... ( -32.40) >DroPer_CAF1 128056 102 + 1 ACAUAUCCAAAGGCAAACCGCCAAAAGGAUAAUCAGCAACAAUUUAGUAUUAUUACACCACGU-UCGAAGCCAUCGAAG---AAGCA-CCCAGCGCC---------CAAGCCCAGG-- ...(((((...(((.....)))....)))))....((.........(((....)))......(-((((.....))))).---..)).-((..((...---------...))...))-- ( -17.10) >consensus ACAUGUCCAAAGGCAAACCGCCAAAAGGAUAAUCAGCAACAAUUUAGUAUUAUUACACCACGU_UCGAAGCCAUCGAAG___AAGCC_CC________________CGAGCCCAGG__ ...(((((...(((.....)))....)))))....((.........(((....)))........((((.....))))................................))....... (-12.42 = -12.53 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:31 2006