Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,353,093 – 6,353,192 |
Length | 99 |
Max. P | 0.685451 |
Location | 6,353,093 – 6,353,192 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 81.67 |
Mean single sequence MFE | -26.48 |
Consensus MFE | -16.84 |
Energy contribution | -16.73 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.11 |
Mean z-score | -1.95 |
Structure conservation index | 0.64 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.685451 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6353093 99 + 27905053 C-AAAAAG-----AAAAA-GGCAAAAAUUAAACGUCUGCAGUUCAGUUUUUCUGACAUCAAAAUUGCAGUUGUGGC-GCAGACAACGCGCCA-AAUUCAAGGCGGUCC----------- .-......-----.....-.((.........(((.(((((((((((.....)))).......))))))).)))(((-((.......))))).-........)).....----------- ( -23.61) >DroSec_CAF1 117739 100 + 1 CCAAAAAG-----AAAAA-GGCAAAAAUUAAACGUCUGCAGUUCAGUUUUUCUGACAUCAAAAUUGCAGUUGUGGC-GCAGACAACGCGCCA-AAUUCAAGGCGGUCC----------- ........-----.....-.((.........(((.(((((((((((.....)))).......))))))).)))(((-((.......))))).-........)).....----------- ( -23.61) >DroSim_CAF1 131377 100 + 1 CCAAAAAG-----AAAAA-GGCAAAAAUUAAACGUCUGCAGUUCAGUUUUUCUGACAUCAAAAUUGCAGUUGUGGC-GCAGACAACGCGCCA-AAUUCAAGGCGGUCC----------- ........-----.....-.((.........(((.(((((((((((.....)))).......))))))).)))(((-((.......))))).-........)).....----------- ( -23.61) >DroEre_CAF1 128852 104 + 1 CAAAAAAGG-UGAAAAAAUGGAAAAAA-UAAACGUCUGCAGUUGCGUUUUUCUGACAUCAAAAUUGCAGUUGUGGC-GCAGACAACGCGCCA-AAUUCAAGGCGGUCC----------- .........-.........(((.....-.....((((((.((..((.....(((.((.......))))).))..))-))))))....((((.-.......)))).)))----------- ( -26.50) >DroYak_CAF1 118838 106 + 1 CAAAAAACGAGGAAAAAAUGGAAAAAAUUAAACGUCUGCAGUUGAGUUUUUCUGACAUCAAAAUUGCAGUUGUGGC-GCAGACAACGCGCCA-AAUUCAAGGCGGUCC----------- ..........(((.......(((........(((.(((((((((((((.....))).)))..))))))).)))(((-((.......))))).-..))).......)))----------- ( -26.04) >DroPer_CAF1 122915 99 + 1 CAACAA-----------------AAAAUGGAAUGUCUGCAGUUGA---UUUUUGACAUCAAAAUUGCAGGCGCGACUGCAGACAACGCGGCAAAAGUCGGGGCGGGGCCCCCACAGCAC ......-----------------.........((((((((((((.---..((((.((.......))))))..))))))))))))..(((((....)))(((((...)))))....)).. ( -35.50) >consensus CAAAAAAG_____AAAAA_GGCAAAAAUUAAACGUCUGCAGUUCAGUUUUUCUGACAUCAAAAUUGCAGUUGUGGC_GCAGACAACGCGCCA_AAUUCAAGGCGGUCC___________ .................................((((((.(((........(((.((.......)))))....))).))))))....((((.........))))............... (-16.84 = -16.73 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:28 2006