Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,349,175 – 6,349,274 |
Length | 99 |
Max. P | 0.930305 |
Location | 6,349,175 – 6,349,274 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 83.73 |
Mean single sequence MFE | -33.05 |
Consensus MFE | -20.61 |
Energy contribution | -21.17 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.08 |
Mean z-score | -2.96 |
Structure conservation index | 0.62 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.692500 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6349175 99 + 27905053 CUCGCUUAUUAUUGUUAUAAUAACGAUGUGCAAAAGCACUUGUGCCACUUGAAAGGGCACUCGUGUUGCAC--AAGGA-AAGUG--GGGCCAGA--AAGGGGCAAA (((((((...(((((((...)))))))(((((...((((..(((((.((....)))))))..)))))))))--.....-)))))--))(((...--....)))... ( -34.90) >DroSec_CAF1 113858 98 + 1 CUCGCUUAUUAUUGUUAUAAUAACGAUGUGCAAAAGCACUUGUGCCACUUGAAAGGGCACUCGUGUUGCAC--AAGGA-AAGUG--GGGCCAGU---AGGGGCAAA (((((((...(((((((...)))))))(((((...((((..(((((.((....)))))))..)))))))))--.....-)))))--))(((...---...)))... ( -35.40) >DroSim_CAF1 127503 98 + 1 CUCGCUUAUUAUUGUUAUAAUAACGAUGUGCAAAAGCACUUGUGCCACUUGAAAGGGCACUCGUGUUGCAC--AAGGA-AAGUG--GGGCCAGU---AGGGGCAAA (((((((...(((((((...)))))))(((((...((((..(((((.((....)))))))..)))))))))--.....-)))))--))(((...---...)))... ( -35.40) >DroEre_CAF1 125099 97 + 1 CUCGCUUAUUAUUGUUAUAAUAACGAUGUGCAAAAGCACUUGUGCCACUUGAAAGGGCACUCGUGUUGCAC--AAGGCGAAAGG--GGGGC----AAAGGAGC-GG ..(((((....(((((..........((((((...((((..(((((.((....)))))))..)))))))))--)...(....).--..)))----))..))))-). ( -32.30) >DroYak_CAF1 114927 100 + 1 CUCGCUUAUUAUUGUUAUAAUAACGAUGUGCAAAAGCACUUGUGCCACUUGAAAGGGCACUCGUGUUGCAC--AUGGA-AAAGG--GGAUCUUUAAGGGGGUC-AG (((..(((((((....)))))))(.(((((((...((((..(((((.((....)))))))..)))))))))--)).).-...))--)((((((....))))))-.. ( -33.70) >DroAna_CAF1 115824 95 + 1 CCCGCUUAUUAUUGUUAUAAUAACGAUGUGCAAAAGCACUUGUGCCACUCGAAAGGGCACUCGAGGUUUUUGGGGGGG-AAAUGAUUGGGGAGU---GG------- (((.((...((((((((...))))))))..(((((((.((((((((...(....))))))..)))))))))))).)))-...............---..------- ( -26.60) >consensus CUCGCUUAUUAUUGUUAUAAUAACGAUGUGCAAAAGCACUUGUGCCACUUGAAAGGGCACUCGUGUUGCAC__AAGGA_AAAUG__GGGCCAGU___AGGGGC_AA .(((.(((((((....)))))))))).(((((...((((..(((((.((....)))))))..)))))))))................................... (-20.61 = -21.17 + 0.56)
Location | 6,349,175 – 6,349,274 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 83.73 |
Mean single sequence MFE | -27.40 |
Consensus MFE | -21.45 |
Energy contribution | -22.32 |
Covariance contribution | 0.86 |
Combinations/Pair | 1.04 |
Mean z-score | -3.23 |
Structure conservation index | 0.78 |
SVM decision value | 1.20 |
SVM RNA-class probability | 0.930305 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6349175 99 - 27905053 UUUGCCCCUU--UCUGGCCC--CACUU-UCCUU--GUGCAACACGAGUGCCCUUUCAAGUGGCACAAGUGCUUUUGCACAUCGUUAUUAUAACAAUAAUAAGCGAG ...(((....--...)))..--.....-....(--(((((((((..(((((((....)).)))))..)))...)))))))((((((((((....))))).))))). ( -28.40) >DroSec_CAF1 113858 98 - 1 UUUGCCCCU---ACUGGCCC--CACUU-UCCUU--GUGCAACACGAGUGCCCUUUCAAGUGGCACAAGUGCUUUUGCACAUCGUUAUUAUAACAAUAAUAAGCGAG ...(((...---...)))..--.....-....(--(((((((((..(((((((....)).)))))..)))...)))))))((((((((((....))))).))))). ( -28.90) >DroSim_CAF1 127503 98 - 1 UUUGCCCCU---ACUGGCCC--CACUU-UCCUU--GUGCAACACGAGUGCCCUUUCAAGUGGCACAAGUGCUUUUGCACAUCGUUAUUAUAACAAUAAUAAGCGAG ...(((...---...)))..--.....-....(--(((((((((..(((((((....)).)))))..)))...)))))))((((((((((....))))).))))). ( -28.90) >DroEre_CAF1 125099 97 - 1 CC-GCUCCUUU----GCCCC--CCUUUCGCCUU--GUGCAACACGAGUGCCCUUUCAAGUGGCACAAGUGCUUUUGCACAUCGUUAUUAUAACAAUAAUAAGCGAG ..-((......----))...--....((((..(--(((((((((..(((((((....)).)))))..)))...)))))))...(((((((....))))))))))). ( -28.90) >DroYak_CAF1 114927 100 - 1 CU-GACCCCCUUAAAGAUCC--CCUUU-UCCAU--GUGCAACACGAGUGCCCUUUCAAGUGGCACAAGUGCUUUUGCACAUCGUUAUUAUAACAAUAAUAAGCGAG ..-.................--.....-....(--(((((((((..(((((((....)).)))))..)))...)))))))((((((((((....))))).))))). ( -26.10) >DroAna_CAF1 115824 95 - 1 -------CC---ACUCCCCAAUCAUUU-CCCCCCCAAAAACCUCGAGUGCCCUUUCGAGUGGCACAAGUGCUUUUGCACAUCGUUAUUAUAACAAUAAUAAGCGGG -------..---...............-....(((........((((((((((....)).)))))..((((....)))).)))(((((((....)))))))..))) ( -23.20) >consensus UU_GCCCCU___ACUGGCCC__CACUU_UCCUU__GUGCAACACGAGUGCCCUUUCAAGUGGCACAAGUGCUUUUGCACAUCGUUAUUAUAACAAUAAUAAGCGAG ...................................(((((((((..(((((((....)).)))))..)))...)))))).((((((((((....))))).))))). (-21.45 = -22.32 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:27 2006