Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,348,717 – 6,348,807 |
Length | 90 |
Max. P | 0.750080 |
Location | 6,348,717 – 6,348,807 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 75.76 |
Mean single sequence MFE | -26.58 |
Consensus MFE | -15.59 |
Energy contribution | -15.62 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.05 |
Mean z-score | -1.60 |
Structure conservation index | 0.59 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.750080 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6348717 90 - 27905053 ----CCCUGCCCG---------------UCCCCCCCCCCUGAGUGGAAUAAUCAAUUUCGAGGAUCAUAAACAACUUUUAAUGAAGUUGUUAAGUGCCAGCAGCUAGUU-------- ----..((((..(---------------..(......((((((..((....))...))).)))......(((((((((....)))))))))..)..)..))))......-------- ( -17.50) >DroVir_CAF1 119971 102 - 1 ----CUCUGCAUCCGCGUCUGGGGACGCUUUA---CGUAUGAGUGGAAUAAUCAAUUUCGAGGAUCAUAAACAACUUUUAAUGAAGUUGUUAAGUGCCAGCAGCUAGUU-------- ----..((((....(((((....)))))..((---(.(((((.((((((.....))))))....)))))(((((((((....)))))))))..)))...))))......-------- ( -28.50) >DroPse_CAF1 110959 84 - 1 ----CGCUUUCCG---------------U---------ACGAGUGGAAUAAUCAAUUUCGAGGAUCAUAAACAACUUUUAAUGAAGUUGUUAAGUGCCAGCAGCUAGC-----AGCU ----.(((....(---------------(---------((((.((((((.....))))))....))...(((((((((....)))))))))..)))).)))(((....-----.))) ( -19.20) >DroYak_CAF1 114401 91 - 1 CGCCCCCUGCCCG---------------UCGC---CCCCUGAGUGGAAUAAUCAAUUUCGAGGAUCAUAAACAACUUUUAAUGAAGUUGUUAAGUGCCAGCAGCUAGUU-------- ......((((..(---------------.(((---..((((((..((....))...))).)))......(((((((((....)))))))))..))))..))))......-------- ( -19.10) >DroMoj_CAF1 164432 102 - 1 ----GUCUGCUGCUGCGUCUGGGGACGCUUUA---CGUAUGAGUGGAAUAAUCAAUUUCGAGGAUCAUAAACAACUUUUAAUGAAGUUGUUAAGUGCCAGCAGCUAGUU-------- ----....(((((((((((....)))))..((---(.(((((.((((((.....))))))....)))))(((((((((....)))))))))..)))..)))))).....-------- ( -33.00) >DroAna_CAF1 115306 110 - 1 ----CGCUGCCCACCCUUUUGGGGGGGAUCCU---CAUAUGAGUGGAAUAAUCAAUUUCGAGGAUCAUAAACAACUUUUAAUGAAGUUGUUAAGUGCCAGCAGCUAGUUGGCCGGCU ----.(((((((.(((....))))))((((((---(((....))(((((.....))))))))))))...(((((((((....)))))))))....((((((.....)))))))))). ( -42.20) >consensus ____CCCUGCCCG_______________UCCA___CCUAUGAGUGGAAUAAUCAAUUUCGAGGAUCAUAAACAACUUUUAAUGAAGUUGUUAAGUGCCAGCAGCUAGUU________ ......((((.................................((((((.....)))))).((......(((((((((....))))))))).....)).)))).............. (-15.59 = -15.62 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:25 2006