Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,343,917 – 6,344,017 |
Length | 100 |
Max. P | 0.919638 |
Location | 6,343,917 – 6,344,017 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 71.16 |
Mean single sequence MFE | -20.89 |
Consensus MFE | -11.15 |
Energy contribution | -11.65 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.82 |
Structure conservation index | 0.53 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.919638 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6343917 100 + 27905053 --AAU-----GCCCCUGCC--CCACCCUUCCCGCCAGUCUUCUUCGACCGCCCUCUAUGGCUUCCUUUUGGCCAUUUUGCCACGGCUUAACAUUUCGCGCUCUCCGCA--C --...-----.........--...........(((.(((......))).((.....((((((.......))))))...))...)))..........(((.....))).--. ( -18.20) >DroPse_CAF1 106266 100 + 1 --ACCUA--GCCCCCUACC--UCCCCCCUUCAAC----CACCUCAUAUCUCGCACUAUGGCUUCCU-UUGGCCAUUUUGCCAUGGCUUAACGUUUCGCGCUUUGCGCAGUC --.....--..........--.............----.............(((..((((((....-..))))))..)))................((((...)))).... ( -17.90) >DroSim_CAF1 122255 100 + 1 --AAU-----GCCCCUGCC--CCGCCCUUCCCGCCAGGCCCCUUCGACCGCCCUCUAUGGCUUCCUUUUGGCCAUUUUGCCACGGCUUAACAUUUCGCGCUCUGCGCA--C --...-----(((...(((--..((.......))..)))..........((.....((((((.......))))))...))...)))..........((((...)))).--. ( -22.50) >DroEre_CAF1 119873 86 + 1 CUCAA----------UGUC--UC-CCCUUUC-------CGCAAGC---CUCCCUCUAUGGCUUCCUUUUGGCCAUUUUUCCACGGCUCAACAUUUCGCGCUCUGCGCA--C .....----------....--..-.......-------....(((---(.......((((((.......))))))........)))).........((((...)))).--. ( -17.66) >DroYak_CAF1 109427 92 + 1 --AAA-----GCCCCUGCC--CC-CACCAAC-------CCCCUGCCAACGCCCUCUAUGGCUUCCUUUUGGCCAUUUUGCCACGGCUUAACAUUUCGCGCUCUGCGCA--C --.((-----(((......--..-.......-------.....((((..........)))).......((((......)))).)))))........((((...)))).--. ( -20.40) >DroAna_CAF1 110808 102 + 1 --ACAUGCGUCCCCCUGCCGUCCGGCAUUGUGGCAGUGCC---CCCAUCCACCUCCAUGGCUUCCU-UUGGCCAUUUUGCCGUGGCUUAACAUUUCGCGCU-UGCACA--C --.((.((((......((((..(((((..(((((......---.((((........))))......-...)))))..)))))))))..........)))).-))....--. ( -28.68) >consensus __AAA_____GCCCCUGCC__CC_CCCUUCC_GC____CCCCUCCCACCGCCCUCUAUGGCUUCCUUUUGGCCAUUUUGCCACGGCUUAACAUUUCGCGCUCUGCGCA__C ........................................................((((((.......))))))...((....))..........((((...)))).... (-11.15 = -11.65 + 0.50)
Location | 6,343,917 – 6,344,017 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 71.16 |
Mean single sequence MFE | -29.03 |
Consensus MFE | -11.69 |
Energy contribution | -12.25 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.14 |
Mean z-score | -1.76 |
Structure conservation index | 0.40 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.532307 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6343917 100 - 27905053 G--UGCGGAGAGCGCGAAAUGUUAAGCCGUGGCAAAAUGGCCAAAAGGAAGCCAUAGAGGGCGGUCGAAGAAGACUGGCGGGAAGGGUGG--GGCAGGGGC-----AUU-- (--(((.....))))..((((((..(((.((.(....(.(((........(((......)))((((......))))))).)....).)).--)))...)))-----)))-- ( -31.60) >DroPse_CAF1 106266 100 - 1 GACUGCGCAAAGCGCGAAACGUUAAGCCAUGGCAAAAUGGCCAA-AGGAAGCCAUAGUGCGAGAUAUGAGGUG----GUUGAAGGGGGGA--GGUAGGGGGC--UAGGU-- ...(((((...)))))........((((.((((......)))).-....((((((.(((.....)))...)))----)))..........--.......)))--)....-- ( -22.50) >DroSim_CAF1 122255 100 - 1 G--UGCGCAGAGCGCGAAAUGUUAAGCCGUGGCAAAAUGGCCAAAAGGAAGCCAUAGAGGGCGGUCGAAGGGGCCUGGCGGGAAGGGCGG--GGCAGGGGC-----AUU-- (--(((.....))))..((((((..(((.((.(....(.((((.......(((......)))((((.....)))))))).)....).)).--)))...)))-----)))-- ( -36.00) >DroEre_CAF1 119873 86 - 1 G--UGCGCAGAGCGCGAAAUGUUGAGCCGUGGAAAAAUGGCCAAAAGGAAGCCAUAGAGGGAG---GCUUGCG-------GAAAGGG-GA--GACA----------UUGAG (--(((.....))))..(((((((.(((((......))))))....(.(((((.........)---)))).).-------.......-..--))))----------))... ( -24.00) >DroYak_CAF1 109427 92 - 1 G--UGCGCAGAGCGCGAAAUGUUAAGCCGUGGCAAAAUGGCCAAAAGGAAGCCAUAGAGGGCGUUGGCAGGGG-------GUUGGUG-GG--GGCAGGGGC-----UUU-- (--(((.....))))........(((((.(.((....(.(((((......((((..........)))).....-------.))))).-).--.)).).)))-----)).-- ( -27.20) >DroAna_CAF1 110808 102 - 1 G--UGUGCA-AGCGCGAAAUGUUAAGCCACGGCAAAAUGGCCAA-AGGAAGCCAUGGAGGUGGAUGGG---GGCACUGCCACAAUGCCGGACGGCAGGGGGACGCAUGU-- (--(((...-.))))...((((...(((.(((((..(((((...-.....)))))....((((.(((.---....)))))))..)))))...)))..(....)))))..-- ( -32.90) >consensus G__UGCGCAGAGCGCGAAAUGUUAAGCCGUGGCAAAAUGGCCAAAAGGAAGCCAUAGAGGGCGAUCGAAGGGG____GC_GAAAGGG_GG__GGCAGGGGC_____UUU__ ...(((((...))))).........(((.((((......))))........((.....))................................)))................ (-11.69 = -12.25 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:22 2006