Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,342,103 – 6,342,209 |
Length | 106 |
Max. P | 0.814828 |
Location | 6,342,103 – 6,342,209 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 86.24 |
Mean single sequence MFE | -26.20 |
Consensus MFE | -17.48 |
Energy contribution | -15.52 |
Covariance contribution | -1.96 |
Combinations/Pair | 1.54 |
Mean z-score | -2.43 |
Structure conservation index | 0.67 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.814828 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6342103 106 - 27905053 -UUAGAAUACUAU-UUGUAAGGUUGCCGUAUACGGCUGAUUUAUAUUUUGGCUUAUAUAACCUUCCCUCUGCAGGCAUUAAAUUUCAAAAUAUAUGUUAUUCCCGAAG -......(((...-..))).((..((((....))))((((.((((((((((..(.((...(((.(.....).)))...)).)..)))))))))).))))...)).... ( -17.60) >DroSec_CAF1 106860 105 - 1 -UUAGAAUACUAU-AUGUAAGGUUAC-UUAUACAGCUGAUUUAUAUUUCGGCUUGUAUAACCUUCCCUCUGCAGGCAUUAAAUAUCAAAAUAUAUGUUAUUCCCGAAG -...(((((.(((-(((((((((...-.(((((((((((........))))).))))))))))).(((....)))..............))))))).)))))...... ( -23.20) >DroSim_CAF1 120431 105 - 1 -UUAGAAUACUAU-UUGUGAGGUUAC-GUAUACGGCUGAUUUAUAUUUCGGCUUAUAUAACCUUCCCUCUGCAGGCAUUAAAUAUCAAAAUAUAUGUUAUUCCCGAAG -...(((((.(((-.((((((((((.-.((...((((((........))))))))..))))))).(((....)))..............))).))).)))))...... ( -19.30) >DroEre_CAF1 118069 104 - 1 UU-GGGAUGCCAGCUAGUGGGGUUAC-GCAUACAGCUGAUUUAUAUUUCGGCUU--GUAGCCCCACUUCUGCAGGCAUUAAAUAUCAAAAUAUAUGCUAUUCCCGAAG ((-((((((((.((.(((((((((((-(.....((((((........)))))))--)))))))))))...)).))))....((((....)))).......)))))).. ( -42.00) >DroYak_CAF1 107553 107 - 1 UUUAGAAUACUCCCUAGUAAGGUUAC-GUGUACUGCUGAUUUAUAUUUCGGCUUAUGUAACCUUGCUUCUGCAGGCAUUAAAUAUCAAAAUAUAUGCUAUUCCCGAAG ....((((((((...(((((((((((-(((....(((((........))))).))))))))))))))...).))((((...((((....)))))))))))))...... ( -28.90) >consensus _UUAGAAUACUAU_UUGUAAGGUUAC_GUAUACAGCUGAUUUAUAUUUCGGCUUAUAUAACCUUCCCUCUGCAGGCAUUAAAUAUCAAAAUAUAUGUUAUUCCCGAAG ....(((((.........(((((((...((((.((((((........)))))))))))))))))..........((((...............)))))))))...... (-17.48 = -15.52 + -1.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:20 2006