Locus 2225

Sequence ID 3R_DroMel_CAF1
Location 6,339,998 – 6,340,103
Length 105
Max. P 0.645503
window3615

overview

Window 5

Location 6,339,998 – 6,340,103
Length 105
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 78.69
Mean single sequence MFE -31.68
Consensus MFE -22.08
Energy contribution -22.47
Covariance contribution 0.39
Combinations/Pair 1.05
Mean z-score -1.22
Structure conservation index 0.70
SVM decision value 0.23
SVM RNA-class probability 0.645503
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6339998 105 + 27905053
ACUUGCAGUAUCGUUAGGCCGGUGUCCUGGGCCAAUUGUUUCUUCUGGUCCUCGGAUGGGUAGGGAUGCUGAAA--GGAAAUGUC-----AAAAU-GAUAUGAUUACAA-UAUU
.(((.(((((((.(...(((...((((.((((((...........))))))..)))).))).).))))))).))--)...(((((-----.....-)))))........-.... ( -29.90)
>DroPse_CAF1 102180 112 + 1
ACUUGCAGUAUCGUUAGGCCUGUAUCCUGGGCCAAUUGUUUCUUCUGGUCCUCCGAGGGGUAGGGAUGCUGCAAUUGGAGAAACCAGAGAAAAAC-AAUGUAAUAAACA-AUUC
..((((..........(((((.......))))).(((((((.(((((((.((((((...((((.....))))..))))))..)))))))..))))-)))))))......-.... ( -36.00)
>DroEre_CAF1 115945 100 + 1
ACUUGCAGUAUCGUUAGGCCGGUGUCCUGGGCCAAUUGUUUCUUCUGGUCCUCGGAUGGGUAGGGAUGCUGAAA--GAAUAUGCG-----AA------UGUGGUUACAA-CAUU
.(((.(((((((.(...(((...((((.((((((...........))))))..)))).))).).))))))).))--)........-----((------(((.......)-)))) ( -28.80)
>DroYak_CAF1 105421 105 + 1
ACUUGCAGUAUCGUUAGGCCGGUGUCCUGGGCCAAUUGUUUCUUCUGGUCCUCGGAUGGGUAGGGAUGCUGUAA--GAAUAUGCG-----AAAAU-GAUAUGAUUAAAA-CAUU
.(((((((((((.(...(((...((((.((((((...........))))))..)))).))).).))))))))))--)........-----.....-.............-.... ( -31.70)
>DroMoj_CAF1 155790 106 + 1
ACUUGCAGUAUCGUCAGGCCAGUAUCCUGCGCCAACUGUUUUUUUUGGUCCUCGGAUGGGUAGGGAUGCUGCAAGGAGAGAAACG-----GAAAU-CGUAAGC--UCAAUUAAU
.(((((((((((.(...(((..(((((.(.(((((.........))))).)..)))))))).).)))))))))))..(((..(((-----.....-)))...)--))....... ( -34.30)
>DroAna_CAF1 107101 106 + 1
ACUUGCAGUAUCGUUAGGCCGGUGUCCUGGGCCAACUGUUUCUUCUGGUCCUCGGAUGGGUAGGGAUGCUGGAA--GGGCAGAAC-----AAUAAGAGUGUGAUUAGAG-CGUG
.(((.(((((((.(...(((...((((.((((((...........))))))..)))).))).).))))))).))--)........-----...................-.... ( -29.40)
>consensus
ACUUGCAGUAUCGUUAGGCCGGUGUCCUGGGCCAAUUGUUUCUUCUGGUCCUCGGAUGGGUAGGGAUGCUGAAA__GGAGAUACC_____AAAAU_AAUAUGAUUACAA_CAUU
.....(((((((.(...(((...((((.((((((...........))))))..)))).))).).)))))))........................................... (-22.08 = -22.47 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:19 2006