Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,337,293 – 6,337,441 |
Length | 148 |
Max. P | 0.921251 |
Location | 6,337,293 – 6,337,405 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 84.04 |
Mean single sequence MFE | -24.83 |
Consensus MFE | -17.62 |
Energy contribution | -18.07 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.13 |
Mean z-score | -1.89 |
Structure conservation index | 0.71 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535736 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6337293 112 - 27905053 GUUAAGAACUAAGUGCGGUGAGCCGUAAGGAUCGCCUCCCUUAAUUUUGCCAUCCAUUCGAACGCAAUUUCUAAUUAUGUGCAUUUUUUCUCUUUUUCCGUUCAUCCGCGGA ....((((..(((((((((((.((....)).)))))..........((((..((.....))..)))).............)))))).)))).....(((((......))))) ( -26.50) >DroSec_CAF1 102070 106 - 1 GUUAAGAACUAAGUGCGGUGAGCCGUGAGGAUCGCCUCCCUUAAUUUUGCCAUCCAUUCGAACGCAAUUUCUAAUUAUGUGCAUUUUUGCUCUUUUUCCGUUCCUC------ .....((((.(((.(((((((.((....)).)))))...........((((((..(((.(((......))).))).))).))).....)).))).....))))...------ ( -23.00) >DroSim_CAF1 115640 106 - 1 GUUAAGAACUAAGUGCGGUGAGCCGUGAGGAUCGCCUCCCUUAAUUUUGCCAUCCAUUCGAACGCAAUUUCUAAUUAUGUGCAUUUUUUCUCUUUUUCCGUUCCUC------ .....((((((((.(.(((((.((....)).))))).).))))....((((((..(((.(((......))).))).))).)))................))))...------ ( -22.80) >DroEre_CAF1 113277 110 - 1 GUUAAGAACUAAGUGCGGUGAGCCGUGAGGAUCGCCUCGCUUAUUUUUGCCAUCCAUUCGAACGCAAUUUCUAAUUAUGUGCAUUUUUUCUCUUUUUCCGUUCUUCCGUU-- ...((((((((((((.(((((.((....)).))))).))))))....((((((..(((.(((......))).))).))).)))................)))))).....-- ( -28.80) >DroYak_CAF1 102681 109 - 1 GUUAAGAACUAAGUGCGGUGAGCCGUGAGGAUCGCCUCGCUUAUU-UUGCCAUCCAUUCGAACGCAAUUUCUAAUUAUGUGCAUUUUUUCUCUUUUUCCGUUUUUGCGCU-- ((.((((((((((((.(((((.((....)).))))).))))))..-.((((((..(((.(((......))).))).))).)))................))))))))...-- ( -27.80) >DroPer_CAF1 105609 98 - 1 AUUAAGAAUUAAGAGAGCUGAUCCA-----GUCAGCUCUCCUUCUUUCGCAAUCCUUUCGACCGCAAUUUCUAAUUAUGCGCAUUUUUUUUGUCUCUCUUCUC--------- .....(((..((((((((((((...-----))))))))).)))..)))((((..........((((...........))))........))))..........--------- ( -20.07) >consensus GUUAAGAACUAAGUGCGGUGAGCCGUGAGGAUCGCCUCCCUUAAUUUUGCCAUCCAUUCGAACGCAAUUUCUAAUUAUGUGCAUUUUUUCUCUUUUUCCGUUCCUC______ ....((((..(((((((((((.((....)).)))))..........((((..((.....))..)))).............)))))).))))..................... (-17.62 = -18.07 + 0.45)
Location | 6,337,332 – 6,337,441 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 78.61 |
Mean single sequence MFE | -27.23 |
Consensus MFE | -14.34 |
Energy contribution | -15.53 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.17 |
Mean z-score | -2.46 |
Structure conservation index | 0.53 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.921251 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6337332 109 - 27905053 AAAAAAUCUCC-AUAACUAUGAAAUAGCGCUUAUCU---AGUUAAGAACUAAGUGCGGUGAGCCGUAAGGAUCGCCUCCCUUAAUUUUGCCAUCCAUUCGAACGCAAUUUCUA ...........-........(((((.((((((((((---.....)))..)))))))(((((.((....)).)))))...........(((..((.....))..)))))))).. ( -23.90) >DroPse_CAF1 99302 104 - 1 GAAAAAUAUCC-AUAACUAUGAAAUGGCGCUGAUUU---AAUUAAGAAUUAAGAGAGCUGAUCCA-----GUCAGCUCUCCUUCUUUCGCAAUCCUUUCGACCGCAAUUUCUA ...........-........(((((.(((.(((...---.(((..(((..((((((((((((...-----))))))))).)))..)))..)))....)))..))).))))).. ( -25.30) >DroEre_CAF1 113314 109 - 1 AAAAAAUCUCC-AUAACUAUGAAAUAGCGCUGAUCU---AGUUAAGAACUAAGUGCGGUGAGCCGUGAGGAUCGCCUCGCUUAUUUUUGCCAUCCAUUCGAACGCAAUUUCUA ...........-........(((((.(((.(((...---.....((((.((((((.(((((.((....)).))))).)))))).)))).........)))..))).))))).. ( -29.43) >DroYak_CAF1 102718 108 - 1 AAAAAAUCUCC-AUAACUAUGAAAUAGCGCUGAUCU---AGUUAAGAACUAAGUGCGGUGAGCCGUGAGGAUCGCCUCGCUUAUU-UUGCCAUCCAUUCGAACGCAAUUUCUA ...........-........(((((.(((.(((...---......(((.((((((.(((((.((....)).))))).)))))).)-)).........)))..))).))))).. ( -29.27) >DroAna_CAF1 104475 108 - 1 GAAAAAUAUCC-AUAACUAUGAAAUGGCGCUUAGUUCAAAGUUGAGAAUUAAGCGGGGAGAGCUGGGAGCAGCAACCCACUUGUUUUUGCA----CUUGAAACGCAAUUUCUA ...........-........(((((.(((((((((((........)))))))))(((....((((....))))..)))....(((((....----...))))))).))))).. ( -30.20) >DroPer_CAF1 105639 105 - 1 GAAAAAUAACCGAUAACUAUGAAAUGGCGCUGAUUU---AAUUAAGAAUUAAGAGAGCUGAUCCA-----GUCAGCUCUCCUUCUUUCGCAAUCCUUUCGACCGCAAUUUCUA ....................(((((.(((.(((...---.(((..(((..((((((((((((...-----))))))))).)))..)))..)))....)))..))).))))).. ( -25.30) >consensus AAAAAAUAUCC_AUAACUAUGAAAUAGCGCUGAUCU___AGUUAAGAACUAAGUGCGGUGAGCCGUGAGGAUCACCUCGCUUAUUUUUGCAAUCCAUUCGAACGCAAUUUCUA ....................(((((.(((...............((((.((((((.(((((..........))))).)))))).))))..............))).))))).. (-14.34 = -15.53 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:15 2006