Locus 2222

Sequence ID 3R_DroMel_CAF1
Location 6,337,077 – 6,337,185
Length 108
Max. P 0.500000
window3609

overview

Window 9

Location 6,337,077 – 6,337,185
Length 108
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.25
Mean single sequence MFE -44.15
Consensus MFE -27.26
Energy contribution -28.32
Covariance contribution 1.06
Combinations/Pair 1.10
Mean z-score -1.39
Structure conservation index 0.62
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6337077 108 + 27905053
G---------UCGGGGCCG--GAUUACG-AGGAUUACAAGUGCUGGCCGUAGUACUCGGCGGGCGGGUAAUGCGGAUAGCCCUGGUGGAAGCCCGGAUCUCCGGGCGGACGGUGCAUCAU
.---------...(.((((--..((((.-((((((((...((((.((((.......)))).)))).)))))((.....))))).))))..((((((....))))))...)))).)..... ( -46.90)
>DroVir_CAF1 108058 111 + 1
C---------CCGUGCUCGUUGCUUGCGCUGGAUUACAAGUGCUGUCCGUAGUAUUCAGCGGGCGGGUAGUGCGGGUAGCCUUGAUGGAAGCCUGGAUCGCCGGGCGGACGAUGCAUCAU
.---------..((((((((((((((((((........)))))(((((((........)))))))((..((.(((((..((.....))..))))).))..)))))).))))).))))... ( -45.00)
>DroGri_CAF1 129202 111 + 1
A---------ACGUGUCCGUUGCCAGCGCUGCAUUACAAGUGCUGUCCGUAGUAUUCAGCGGGCGGGUAGUGCGGAUAGCCUUGAUGGAAGCCCGGAUCGCCGGGCGGACGAUGCAUCAU
.---------.(((((((....(((((...))....((((.((((((((((.(((((.......))))).)))))))))))))).)))..((((((....)))))))))).)))...... ( -49.30)
>DroWil_CAF1 191819 97 + 1
A---------U---G--CG--U-------UGCAUUACAAAUGCUGGCCAUAGUAUUCAGCUGGCGGGUAAUGGGGAUAGCCUUGAUGGAAGCCAGGAUCACCGGGCGGACGAUGCAUCAU
(---------(---(--((--(-------((((((((...(((..((...........))..))).))))))(((....)))........(((.((....)).)))...))))))))... ( -30.40)
>DroMoj_CAF1 152631 111 + 1
G---------CCGUGUCCGUUGCCGGCGCUGGAUUACAAGUGCUGUCCAUAGUAUUCGGCGGGCGGGUAGUGCGGAUAGCCUUGAUGGAAACCCGGAUCACCGGGCGGACGAUGCAUCAU
(---------(..(((((((..((((..((((....((((.(((((((.((.((((((.....)))))).)).)))))))))))..(....)))))....)))))))))))..))..... ( -48.50)
>DroAna_CAF1 104243 117 + 1
GACCUCAUAAAUGGGAUCA--CCCUACG-CGGAUUACAAGUGCUGGCCGUAGUAUUCGGCAGGCGGGUAGUGCGGGUAGCCCUGAUGGAAUCCAGGAUCUCCCGGCGGACGGUGCAUCAU
..((........))(((((--((...((-((((((...((.((((.(((((.((((((.....)))))).))))).)))).)).....))))).((.....)).)))...)))).))).. ( -44.80)
>consensus
G_________ACGUGUCCG__GCCUGCG_UGGAUUACAAGUGCUGGCCGUAGUAUUCAGCGGGCGGGUAGUGCGGAUAGCCUUGAUGGAAGCCCGGAUCACCGGGCGGACGAUGCAUCAU
..............................(.(((.((((.((((.(((((.(((((.......))))).))))).))))))))..(...((((((....))))))...)))).)..... (-27.26 = -28.32 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:14 2006