Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,333,041 – 6,333,141 |
Length | 100 |
Max. P | 0.574807 |
Location | 6,333,041 – 6,333,141 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 96.20 |
Mean single sequence MFE | -35.60 |
Consensus MFE | -34.16 |
Energy contribution | -33.96 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.07 |
Mean z-score | -1.08 |
Structure conservation index | 0.96 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574807 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6333041 100 + 27905053 UUGGCGCUGGUCUAAGGGUUCCGCAGUGUGUUAAAGUUGGGCUUGAGUUCGAGGGCCAGCCAACUGACAGCUGGCAAAUUGCGAACGGACCCACGUCAGU ((((((..(((((....((((.(((((.........((((((....))))))..((((((.........))))))..))))))))))))))..)))))). ( -35.80) >DroSec_CAF1 97851 100 + 1 UUGGCGCUGGUCUAAGGGUUCCGCAGUGAGUUAAAGUUGGGCUUGAGUUCGAGGGCCAGCCAACUGACAGCUGGCAAAUUGCGAACGGACCCACGUCAGU ((((((..(((((....((((.(((((.........((((((....))))))..((((((.........))))))..))))))))))))))..)))))). ( -35.80) >DroSim_CAF1 111411 100 + 1 UUGGCGCUGGUCUAAGGGUUCCGCAGUGAGUUAAAGUUGGGCUUGAGUUCGAGGGCCAGCCAACUGACAGCUGGCAAAUUGCGAACGGACCCACGUCAGU ((((((..(((((....((((.(((((.........((((((....))))))..((((((.........))))))..))))))))))))))..)))))). ( -35.80) >DroEre_CAF1 108963 100 + 1 UUGGCGCUGCUCUAAGGGUUCCACAUUCAGUUAAAGUUGGGCUCGAGUUCGAGGGCCAGCCAACUGACAGCUGGCAAAUUGCGAACGGACCCACGUCAGU ((((((((......))((.(((.....(((((..((((((((((........))))...))))))...)))))((.....))....))).)).)))))). ( -30.50) >DroYak_CAF1 98274 100 + 1 UUGGCGCUGGUCUAAGGGUUCCACCUUCAGUUGAAGUUGGGCUUGAGUUCGAGGGCCAGCCAACUGACAGCUGGCAAAUUGCGAACGGACCCACGUCAGU ((((((..(((((..((((.(((.((((....)))).)))))))..(((((...((((((.........))))))......))))))))))..)))))). ( -40.10) >consensus UUGGCGCUGGUCUAAGGGUUCCGCAGUGAGUUAAAGUUGGGCUUGAGUUCGAGGGCCAGCCAACUGACAGCUGGCAAAUUGCGAACGGACCCACGUCAGU ((((((..(((((..((((((.((...........)).))))))..(((((...((((((.........))))))......))))))))))..)))))). (-34.16 = -33.96 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:09 2006