Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 888,642 – 888,744 |
Length | 102 |
Max. P | 0.573806 |
Location | 888,642 – 888,744 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 77.92 |
Mean single sequence MFE | -28.50 |
Consensus MFE | -18.26 |
Energy contribution | -17.93 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.11 |
Mean z-score | -1.57 |
Structure conservation index | 0.64 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.573806 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 888642 102 - 27905053 UGGCGCGACAUUUAAGCCCUUUUAAUGAAAAUUAAUGCGGCUUAGUUGC--GGGCCCCUGCACCCUGU---GUUUAACCCCCUGCUGCCCCGCCCCUCUUCCACCGC .((((((((...((((((...(((((....)))))...)))))))))))--((((....(((....((---.....))....))).)))).)))............. ( -31.00) >DroPse_CAF1 64324 103 - 1 UGGCGCGACAUUUAAGCCCUUUUAAUGAAAAUUAAUGCGGCUUAGUUUCUCUGGACUCUGGACUUUGG---ACUGGACUCUCU-CCGCGGCGCCCCCUUUGUGUCUC .(((((((...(((((((...(((((....)))))...)))))))..))...(((.((..(.......---.)..)).)))..-.....)))))............. ( -27.10) >DroPer_CAF1 64201 106 - 1 UGGCGCGACAUUUAAGCCCUUUUAAUGAAAAUUAAUGCGGCUUAGUUUCUCUGGACUCUGGACUCUGUCCACCCGCUCUCUCU-CCACGGCGCUCCCUUUGUGUCUC .(((((((...(((((((...(((((....)))))...))))))).......(((...(((((...)))))..((((......-....)))).)))..))))))).. ( -27.40) >consensus UGGCGCGACAUUUAAGCCCUUUUAAUGAAAAUUAAUGCGGCUUAGUUUCUCUGGACUCUGGACUCUGU___ACUGAACUCUCU_CCGCGGCGCCCCCUUUGUGUCUC .(((((.....(((((((...(((((....)))))...)))))))..((....))..................................)))))............. (-18.26 = -17.93 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:03 2006