Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,332,528 – 6,332,621 |
Length | 93 |
Max. P | 0.703966 |
Location | 6,332,528 – 6,332,621 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 89.30 |
Mean single sequence MFE | -28.00 |
Consensus MFE | -22.15 |
Energy contribution | -22.40 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.15 |
Mean z-score | -2.56 |
Structure conservation index | 0.79 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.703966 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6332528 93 - 27905053 UUUUAACAGUGCUGCUCCA------AAUACCAUGGCAUUCUCUACUUCAUUGGGUUGUUAUUU-UUUGGCAGGCACUGCUAAUGCCAAUCGAGUGGCACC- ..(((.(((((((...(((------((....((((((..(((.........))).))))))..-)))))..))))))).)))(((((......)))))..- ( -27.50) >DroSec_CAF1 97345 94 - 1 UUUUAACAGUGCUGCUCCA------AAUACCAUGGCAUUCUCUACUUCAUUGGGUUGUUAUUUUUUUGGCAGGCACUGCUAAUGCCAAUCGAGUGGCACC- ..(((.(((((((...(((------((....((((((..(((.........))).))))))...)))))..))))))).)))(((((......)))))..- ( -27.80) >DroSim_CAF1 110906 94 - 1 UUUUAACAGUGCUGCUCCA------AAUACCAUGGCAUUCUCUACUUCAUUGGGUUGUUAUUUUUUUGGCAGGCACUGCUAAUGCCAAUCGAGUGGCACC- ..(((.(((((((...(((------((....((((((..(((.........))).))))))...)))))..))))))).)))(((((......)))))..- ( -27.80) >DroEre_CAF1 108468 94 - 1 UUCUUACAGUGCUGCUCCA------AAUACCAUCGCAUUCUCCACCUCAUUGGGCUGUUAUUU-UUUGGCAGGCGCUGCUAAUGCCAAUCGAGUGGCACCC ........((((..(((..------........(((....((((......))))((((((...-..)))))))))..((....)).....)))..)))).. ( -25.10) >DroYak_CAF1 97706 93 - 1 UUUUUGCAGUGCUGCUUCA------AAUACCAUCGUAUUCUCCACUUCAUUGGGUUGUUAUUU-UUUGGCAGGCGCUGCUAAUGCCAAUCGAGUGGCACC- .....(((((((((((..(------((((.((........((((......)))).)).)))))-...)))).)))))))...(((((......)))))..- ( -25.90) >DroAna_CAF1 100042 99 - 1 UUUUUGCAGUGCAUCUCCAGGAGUGAAGACCAGGAUAUUCUCCACUUCAUUGGUUCGUUAUUU-UUUGGCAGGCGCUGCUAAUGCCACUCGAGUGGCACC- .....(((((((....((((((((((.((((((((...........)).))))))..))).))-)))))...)))))))...((((((....))))))..- ( -33.90) >consensus UUUUAACAGUGCUGCUCCA______AAUACCAUGGCAUUCUCCACUUCAUUGGGUUGUUAUUU_UUUGGCAGGCACUGCUAAUGCCAAUCGAGUGGCACC_ ........((((..(((..............((((((...((((......)))).))))))....(((((((((...)))..))))))..)))..)))).. (-22.15 = -22.40 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:08 2006