Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,328,821 – 6,328,933 |
Length | 112 |
Max. P | 0.644394 |
Location | 6,328,821 – 6,328,933 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 73.30 |
Mean single sequence MFE | -18.56 |
Consensus MFE | -0.95 |
Energy contribution | -1.31 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.17 |
Mean z-score | -1.44 |
Structure conservation index | 0.05 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.644394 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6328821 112 + 27905053 AUACUUCAACGAAAGUUAUG--AUUGUAUAAAAGUGCAAUAAUUAUUUGAAAAAUUUGCUUACUAGUGAAUCAAUCACCAACGAACUUUCCUCUCUGCACUUUCAUUCAAAUGU ((((.(((((....))..))--)..)))).((((((((.........(((...(((..((....))..)))...))).....((.......))..))))))))........... ( -17.70) >DroSec_CAF1 93650 112 + 1 AUACUUCUGCGAAAGAUAUG--CUUGGAUAAAAGUCCAAUAAUUAUUCGAAAAAUAUGUCUAGUAGAGAAUCAAUCACCACCAAACUUUCCUCUCUGCACUUUCAUUCAAAUAU ..........(((((.....--.((((((....)))))).......................(((((((......................))))))).))))).......... ( -18.05) >DroSim_CAF1 107202 110 + 1 AUACUUUUGCGAAGGAUAUG--AUUGUAUA--AUUACAAUAAUUAUUUCAAAAAUAUGCUUACUAGAGAAUCAAUCAUCACCAAACUUUCCUCUCUGCACUUUCAUUCAAAUAU .......(((.(((.((((.--.(((.(((--((((...)))))))..)))..)))).)))...(((((......................))))))))............... ( -13.15) >DroEre_CAF1 104719 111 + 1 AUACUUCUGCUGCAGGUGUGGGAAUG---AAAUGUACCCUGAUGAGUCGAAAAGUAAAAUUCCCCGAGAAUCAAUCAGCAACUAACUUUGCUCUCUGCAUCUGCAUUCAAAUAC ..........(((((((((((((((.---.....(((..(((....)))....)))..)))))).((((........((((......)))))))).)))))))))......... ( -24.50) >DroYak_CAF1 93958 100 + 1 AUACUUCUGCUGGAGAAAUGUGAUUG---AAUU-----------AUUCGAAAAGUAAAAUUCCCAGCGAAUCAAUCACCAGGAAACUUUCCUCUCUGCAUUUCCAUUCAAAUAU .......(((.(((((...(((((((---(...-----------.((((....(.......)....)))))))))))).((....))....))))))))............... ( -19.40) >consensus AUACUUCUGCGAAAGAUAUG__AUUG_AUAAAAGUACAAUAAUUAUUCGAAAAAUAUGAUUACUAGAGAAUCAAUCACCAACAAACUUUCCUCUCUGCACUUUCAUUCAAAUAU ...............................................................((((((......................))))))................. ( -0.95 = -1.31 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:07 2006