Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,324,730 – 6,324,843 |
Length | 113 |
Max. P | 0.739343 |
Location | 6,324,730 – 6,324,843 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 79.52 |
Mean single sequence MFE | -28.75 |
Consensus MFE | -21.39 |
Energy contribution | -21.17 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.10 |
Mean z-score | -1.33 |
Structure conservation index | 0.74 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.739343 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6324730 113 + 27905053 UGCUGCUGCUGUAAUGUGUCCUUGGGGCGUCGUUUAAUUGCUUUUACCAAUUUGAUUUUCAAGUGCCAUUAAGCCGGGCACGCCCCACAUGCCACGCCCGCCGUUC-----CUGCCAC .((.(..((.((..((((.(..((((((((.((((....((((......(((((.....)))))......)))).))))))))))))...).))))...)).))..-----).))... ( -29.40) >DroPse_CAF1 86947 118 + 1 UGUUGUUGUUGUAAUGUGUCCUUGGGGCGUCGUUUAAUUGCUUUUACCAAUUUGAUUUUCAAGUGCCAUUAAGCCAGGCACGCCCCACAUGCCACAGUAGCAGCACCCCCCCUACCGC ((((((((((((..(((((....(((((((.((((....((((......(((((.....)))))......)))).))))))))))))))))..))))))))))))............. ( -35.20) >DroGri_CAF1 114790 112 + 1 GCUCGCUGUUGUAAUGUGUCCUUGGGGCGUCAUUUAAUUGCUUUUACCAAUUUGAUUUUCAAGUGCCAUUAAGCCUGGCACGCCUCCGUUCCCCCG-CACCCGCCU-----CUGCCAC ....((.(..((..((((....((((((((((...(((((.......)))))))))......((((((.......))))))))).)))......))-))...))..-----).))... ( -24.30) >DroWil_CAF1 174463 100 + 1 UGUUGUUGUUGUAAUGUGUCCUUGGGGCGUCAUUUAAUUGCUUUUACCAAUUUGAUUUUCAAGUGCCAUUAAGCCAGGCACGCCCCAA-GCCCAUAC-----------------CCAC ..............((((..((((((((((((...(((((.......)))))))))......(((((.........))))))))))))-)..)))).-----------------.... ( -30.00) >DroMoj_CAF1 137349 99 + 1 UGGCGCUGCUGUAAUGUGUCCUUGGGGCGUCAUUUAAUUGCUUUUACCAAUUUGAUUUUCAAGUGCCAUUAAGCUCGGCACGCCCCACCGCCCAA-------------------CCAC .((((..((......)).....((((((((((...(((((.......)))))))))......(((((.........))))))))))).))))...-------------------.... ( -27.90) >DroAna_CAF1 93283 93 + 1 UGCUGUUGCUGUAAUGUGUCCUUGGGGCGUCGUUUAAUUGCUUUUACCAAUUUGAUUUUCAAGUGCCAUUAAGCCAGGCACGCCCCACAUGCG------------------------- .((....))......((((...((((((((.((((....((((......(((((.....)))))......)))).)))))))))))).)))).------------------------- ( -25.70) >consensus UGUUGCUGCUGUAAUGUGUCCUUGGGGCGUCAUUUAAUUGCUUUUACCAAUUUGAUUUUCAAGUGCCAUUAAGCCAGGCACGCCCCACAUCCCAC___________________CCAC ......................((((((((((...(((((.......)))))))))......(((((.........)))))))))))............................... (-21.39 = -21.17 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:06 2006