Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,324,119 – 6,324,223 |
Length | 104 |
Max. P | 0.596755 |
Location | 6,324,119 – 6,324,223 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 75.65 |
Mean single sequence MFE | -36.23 |
Consensus MFE | -20.99 |
Energy contribution | -21.83 |
Covariance contribution | 0.83 |
Combinations/Pair | 1.13 |
Mean z-score | -1.48 |
Structure conservation index | 0.58 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.596755 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6324119 104 + 27905053 GGAAAGGAUCUGUCAGCUGCAGGACAACGAGAUGCGAGCCUGCAAUUGACGGACGCAUUGUGCGGCGGACUGUU-UUAGGACUCAGCCAACAAAGGCGCCAGUGC ........((((((((.((((((....((.....))..)))))).)))))))).((((((.((((.(..(((..-.)))..))).(((......))))))))))) ( -37.20) >DroVir_CAF1 94792 92 + 1 ------AAGCUGUCAUCUGCAGCGAUUUGCGAUG-UGGCCUGCAAUUGACGAGCGCAUUGUGCGGCG-ACUGUUUUUAGGACUC-GCCAACAAAGCGAC----CG ------..(((((((..((((((.((.......)-).).)))))..)))).)))((.((((..((((-(..(((.....)))))-))).)))).))...----.. ( -32.30) >DroPse_CAF1 86491 102 + 1 -GAAAGGAGCUGUCAGCGGCAGGCCGGCGAGAUGUGUGUCUGCAAUUGACGGACGCAUUGUGCGGCGG-CUGUU-UUAGGACUGAGCCAACAAAGGAGCUUACAC -.....((((((((...(((((.(((.((....((((((((((....).)))))))))....)).)))-)))))-....)))....((......))))))).... ( -36.80) >DroMoj_CAF1 136959 92 + 1 ------UAGCUGUCAUCUGCAGUGCGAGGCGAGC-UGGCCUGCAAUUGACAGGCGCAUUGUGCGGCA-ACUGUUUUUAGGACUC-GCCAACAAAGCGAG----CG ------...((((((..(((((.((.((.....)-).)))))))..)))))).(((.((((..(((.-...(((.....)))..-))).)))).)))..----.. ( -35.10) >DroAna_CAF1 92756 104 + 1 GGCAAGGAUCUGUCAACUGCAGGCGAACGAGAGCCGAGCCUGCAAUUGACGGACGCAUUGUGCGGCGGACUGUU-UUAGGACUCAGCCAACAAAGGCGUUUGUGC .(((((..((((((((.(((((((...(....)....))))))).))))))))(((.((((..(((.((..(((-....))))).))).))))..)))))))).. ( -40.30) >DroPer_CAF1 92770 101 + 1 -GAAAGGAGCUGUCAGCGGCAGGCCGGCGAGAUGUGUGUCUGCAAUUGACGGACGCAUUGUGCGGCGG-CUGUU-UUAGGACUGAGCCAACAAAGGAGC-UACAC -....(.(((((((...(((((.(((.((....((((((((((....).)))))))))....)).)))-)))))-....)))....((......)))))-).).. ( -35.70) >consensus _GAAAGGAGCUGUCAGCUGCAGGCCGACGAGAUG_GAGCCUGCAAUUGACGGACGCAUUGUGCGGCGGACUGUU_UUAGGACUCAGCCAACAAAGGAGC_U__AC .........(((((((.((((((...............)))))).))))))).....((((..(((.....(((.....)))...))).))))............ (-20.99 = -21.83 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:05 2006