Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,318,052 – 6,318,156 |
Length | 104 |
Max. P | 0.500000 |
Location | 6,318,052 – 6,318,156 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.81 |
Mean single sequence MFE | -22.25 |
Consensus MFE | -18.16 |
Energy contribution | -18.38 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -1.67 |
Structure conservation index | 0.82 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6318052 104 - 27905053 UGUU---GAUGAAAUAAAAUCCGCCUUUUGUGCAUUUAAUUUUUAGAAUGCCCCAGACAAAAGCGCAGGCAACAACAAAGGGCGUAU-CC--AAAAAU-UAAACGCAA--------ACA- .((.---(((........))).))......(((.((((((((((.((((((((.........((....)).........)))))).)-).--))))))-)))).))).--------...- ( -22.57) >DroVir_CAF1 88494 98 - 1 UGUU---GAUGAAAUAAAAUCCGCCUUUUGUGCAUUUAAUUUUUAGAAUGC--CAAACA-AAGCGCAGGCAACAACAAAGGGCGUAC-C-----AAAU-AUAACGCAA--------GCG- .(((---(((........)))((((((((((((((((........))))))--......-..((....))....))))))))))...-.-----....-........)--------)).- ( -21.30) >DroGri_CAF1 107635 98 - 1 UGUU---GAUGAAAUAAAAUCCGCCUUUUGUGCAUUUAAUUUUUAGAAUGC--CAAACA-AAGCGCAGGCAACAACAAAGGGCGUAC-C-----AAAU-AUAACGCAA--------GCG- .(((---(((........)))((((((((((((((((........))))))--......-..((....))....))))))))))...-.-----....-........)--------)).- ( -21.30) >DroWil_CAF1 167260 117 - 1 UGUUGCUGAUGAAAUAAAAUCCGCCUUUUGUGCAUUUAAUUUUUAGAAUGC-UCAAACAAAGGGACAGGCAACAACAAAGGGCGUAC-CCCAAAAAAU-AUAACGCAAUGCCGGCAACAG ((((((((............(((((((((((((((((........))))))-....)))))))).).(....)......))((((..-..........-...)))).....)))))))). ( -31.06) >DroMoj_CAF1 130578 98 - 1 UGUU---GAUGAAAUAAAAUCCGCCUUUUGUGCAUUUAAUUUUUAGAAUGG--CAAACA-AAGCGCUGGCAACAACAAAGGGCGUAC-C-----AAAU-AUAACGCAA--------GCG- .(((---(((........)))((((((((((.(((((........)))))(--(.....-..))..((....))))))))))))...-.-----....-........)--------)).- ( -19.40) >DroPer_CAF1 85279 105 - 1 UGUU---GAUGAAAUAAAAUCCGCCUUUUGUGCAUUUAAUUUUUAGAAUUU-CCAGACAAAAGCGCAGGCAACAACAAAGGGCGUAUACC--AAAAAUGUUAACGCAA--------ACA- .(((---(((...........((((((((((((..................-..........))...(....).))))))))))......--......))))))....--------...- ( -17.89) >consensus UGUU___GAUGAAAUAAAAUCCGCCUUUUGUGCAUUUAAUUUUUAGAAUGC__CAAACA_AAGCGCAGGCAACAACAAAGGGCGUAC_C_____AAAU_AUAACGCAA________ACA_ (((....(((........)))((((((((((((((((........))))))................(....).))))))))))....................)))............. (-18.16 = -18.38 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:00 2006