| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,312,217 – 6,312,366 |
| Length | 149 |
| Max. P | 0.921759 |
| Location | 6,312,217 – 6,312,337 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.36 |
| Mean single sequence MFE | -33.87 |
| Consensus MFE | -24.40 |
| Energy contribution | -24.40 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.841168 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6312217 120 + 27905053 CCCAGUCACCAGUCAGCAGUCACCAGUUGAGGUGCCAGUGGCGCAGAUCCGUGGCCAAAUGUAGCGCCAAUUGCUACGCAUUUGCGAGCACCGAGGCGCCUAUAACAAAUGCCAAUCGUG ....(((((..(((.((.(((((..((......))..))))))).)))..)))))....(((((((((...((((.(((....)))))))....)))).)))))................ ( -37.20) >DroPse_CAF1 74272 94 + 1 ------------------------CGUAGCGGCGUCGGU--UGCAGCUCCGUGGCCAAAUGUAGCGCCAAUUGCUACGCAUUUGCGAGCACCAAGGCGCCUAUAACAAAUGCCAAUCGUG ------------------------......(((((.(((--..(......)..)))...(((((((((...((((.(((....)))))))....)))).)))))....)))))....... ( -34.50) >DroEre_CAF1 84582 106 + 1 CCCAGUCA--------------CCGGUUGAGGUGCCAGCGGCGCAGAUCCGUGGCAAAAUGUAGCGCCAAUUGCUACGCAUUUGCGAGCACCGAGGCGCCUAUAACAAAUGCCAAUCGUG ....((((--------------(.((((...(((((...))))).)))).)))))....(((((((((...((((.(((....)))))))....)))).)))))................ ( -37.60) >DroMoj_CAF1 122683 90 + 1 ------------------------CGUAUC---GCCCGC--UGCAU-UUUGUGGCCAAAUGUAGCGCCAAUUGCUACGCAUUUGCGAGCACCGAGGCGCCUAUAACAAAUGCCAAUCGUG ------------------------.((((.---(.((((--.....-...)))).)...(((((((((...((((.(((....)))))))....)))).)))))....))))........ ( -26.10) >DroAna_CAF1 80287 96 + 1 GGCUGU------------------A-----GCUGGAGCUGAAGGAGAUCCGUGGCCAAAUGUAGCGCCAAUUGCUACGCAUUUGCGAGCAA-AAGGCGCCUAUAACAAAUGCCAAUCGUG ((((.(------------------(-----((....))))..((....))..))))...(((((((((..(((((.(((....))))))))-..)))).)))))................ ( -33.30) >DroPer_CAF1 79551 94 + 1 ------------------------CGUAGCGGCGUCGGU--UGCAGCUCCGUGGCCAAAUGUAGCGCCAAUUGCUACGCAUUUGCGAGCACCAAGGCGCCUAUAACAAAUGCCAAUCGUG ------------------------......(((((.(((--..(......)..)))...(((((((((...((((.(((....)))))))....)))).)))))....)))))....... ( -34.50) >consensus ________________________CGUAGCGGUGCCGGU__UGCAGAUCCGUGGCCAAAUGUAGCGCCAAUUGCUACGCAUUUGCGAGCACCAAGGCGCCUAUAACAAAUGCCAAUCGUG ...................................................((((....(((((((((...((((.(((....)))))))....)))).)))))......))))...... (-24.40 = -24.40 + 0.00)
| Location | 6,312,217 – 6,312,337 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.36 |
| Mean single sequence MFE | -36.02 |
| Consensus MFE | -27.93 |
| Energy contribution | -27.93 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.78 |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.921759 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6312217 120 - 27905053 CACGAUUGGCAUUUGUUAUAGGCGCCUCGGUGCUCGCAAAUGCGUAGCAAUUGGCGCUACAUUUGGCCACGGAUCUGCGCCACUGGCACCUCAACUGGUGACUGCUGACUGGUGACUGGG (((.....((((((((....(((((....))))).)))))))).(((((..((((((...(((((....)))))..))))))....((((......))))..)))))....)))...... ( -43.20) >DroPse_CAF1 74272 94 - 1 CACGAUUGGCAUUUGUUAUAGGCGCCUUGGUGCUCGCAAAUGCGUAGCAAUUGGCGCUACAUUUGGCCACGGAGCUGCA--ACCGACGCCGCUACG------------------------ ......((((...(((....((((((....(((((((....))).))))...)))))))))....))))((.(((.((.--......)).))).))------------------------ ( -34.20) >DroEre_CAF1 84582 106 - 1 CACGAUUGGCAUUUGUUAUAGGCGCCUCGGUGCUCGCAAAUGCGUAGCAAUUGGCGCUACAUUUUGCCACGGAUCUGCGCCGCUGGCACCUCAACCGG--------------UGACUGGG ......(((((..(((....((((((....(((((((....))).))))...)))))))))...)))))(((.......)))(..(((((......))--------------)).)..). ( -40.60) >DroMoj_CAF1 122683 90 - 1 CACGAUUGGCAUUUGUUAUAGGCGCCUCGGUGCUCGCAAAUGCGUAGCAAUUGGCGCUACAUUUGGCCACAAA-AUGCA--GCGGGC---GAUACG------------------------ ......((((...(((....((((((....(((((((....))).))))...)))))))))....))))....-.(((.--....))---).....------------------------ ( -29.50) >DroAna_CAF1 80287 96 - 1 CACGAUUGGCAUUUGUUAUAGGCGCCUU-UUGCUCGCAAAUGCGUAGCAAUUGGCGCUACAUUUGGCCACGGAUCUCCUUCAGCUCCAGC-----U------------------ACAGCC ......((((...(((....((((((..-((((((((....))).)))))..)))))))))....)))).(((.((.....)).))).((-----.------------------...)). ( -34.40) >DroPer_CAF1 79551 94 - 1 CACGAUUGGCAUUUGUUAUAGGCGCCUUGGUGCUCGCAAAUGCGUAGCAAUUGGCGCUACAUUUGGCCACGGAGCUGCA--ACCGACGCCGCUACG------------------------ ......((((...(((....((((((....(((((((....))).))))...)))))))))....))))((.(((.((.--......)).))).))------------------------ ( -34.20) >consensus CACGAUUGGCAUUUGUUAUAGGCGCCUCGGUGCUCGCAAAUGCGUAGCAAUUGGCGCUACAUUUGGCCACGGAUCUGCA__ACCGGCACCGCUACG________________________ ......((((...(((....((((((....(((((((....))).))))...)))))))))....))))................................................... (-27.93 = -27.93 + 0.00)
| Location | 6,312,257 – 6,312,366 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.75 |
| Mean single sequence MFE | -37.22 |
| Consensus MFE | -30.14 |
| Energy contribution | -30.14 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.591144 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6312257 109 - 27905053 CAAUUAAAUAUCGCUGGCGUC------GUCCA-----CGACACGAUUGGCAUUUGUUAUAGGCGCCUCGGUGCUCGCAAAUGCGUAGCAAUUGGCGCUACAUUUGGCCACGGAUCUGCGC ..........(((.(((((((------(....-----))))........((..(((....((((((....(((((((....))).))))...)))))))))..)))))))))........ ( -38.00) >DroVir_CAF1 82559 107 - 1 CAAUUAAAUAUCGCUGGCGUC------GUCCA-----CGACACGAUUGGCAUUUGUUAUAGGCGCCUGGGUGCUCGCAAAUGCGUAGCAAUUGGCGCUACAUUUGGCCACAAA-AUGCA- ................(((((------(....-----)))).....((((...(((....((((((....(((((((....))).))))...)))))))))....))))....-..)).- ( -35.80) >DroGri_CAF1 100492 113 - 1 CAAUUAAAUAUCGCUGGCGUCGCAAACGUACA-----CGACACGAUUGGCAUUUGUUAUAGGCGCCUUGGUGCUCGCAAAUGCGUAGCAAUUGGCGCUACAUUUGGCCACAAA-CUGCA- ............((.((.((((..........-----)))).)...((((...(((....((((((....(((((((....))).))))...)))))))))....))))....-).)).- ( -34.20) >DroWil_CAF1 160515 108 - 1 CAAUUAAAUAUCGCUGGCGUC------GUCCA-----CGACACGAUUGGCAUUUGUUAUAGGCGCCUUGGUGCUCGCAAAUGCGUAGCAAUUGGCGCUACAUUUGGCCAGAAAAGUGCA- .............((((((((------(....-----))))........((..(((....((((((....(((((((....))).))))...)))))))))..))))))).........- ( -38.50) >DroYak_CAF1 76300 114 - 1 CAAUUAAAUAUCGCUGGCGUC------GUCCACACAACGACACGAUUGGCAUUUGUUAUAGGCGCCUCGGUGCUCGCAAAUGCGUAGCAAUUGGCGCUACAUUUGGCCACGGAUCUGCGC ..........(((.(((((((------((.......)))))........((..(((....((((((....(((((((....))).))))...)))))))))..)))))))))........ ( -38.20) >DroAna_CAF1 80304 107 - 1 CAAUUAAAUAUCGCUGGCGUC------G-CCA-----CGACACGAUUGGCAUUUGUUAUAGGCGCCUU-UUGCUCGCAAAUGCGUAGCAAUUGGCGCUACAUUUGGCCACGGAUCUCCUU ..........(((.((((...------)-)))-----)))......((((...(((....((((((..-((((((((....))).)))))..)))))))))....)))).((....)).. ( -38.60) >consensus CAAUUAAAUAUCGCUGGCGUC______GUCCA_____CGACACGAUUGGCAUUUGUUAUAGGCGCCUUGGUGCUCGCAAAUGCGUAGCAAUUGGCGCUACAUUUGGCCACAAAUCUGCA_ .........((((.((.((..................)).))))))((((...(((....((((((....(((((((....))).))))...)))))))))....))))........... (-30.14 = -30.14 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:59 2006