Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,311,114 – 6,311,205 |
Length | 91 |
Max. P | 0.791373 |
Location | 6,311,114 – 6,311,205 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 81.38 |
Mean single sequence MFE | -23.40 |
Consensus MFE | -17.06 |
Energy contribution | -17.06 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.81 |
Structure conservation index | 0.73 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.791373 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6311114 91 - 27905053 AGCUGGCGCAUAUGCUGCCGCCCCCACACCAC---------ACCACCACCACUGAGGAAGCCACUGCUACACUUUCCACAACCAAUUUGGUGGUGCAGGA .((.(((((....)).))))).......((.(---------(((((((((.....)).(((....)))...................))))))))..)). ( -25.60) >DroSec_CAF1 75976 88 - 1 AGCUGGCGCAUAUGCUGCCGCCCCCACACCAC---------ACCACCACAUCC---UUAGCCACUGCUACACUUUCCACAACCAAUUUGGUGGUGCAGGA .((.(((((....)).))))).((..((((((---------............---.((((....)))).........(((.....)))))))))..)). ( -22.20) >DroSim_CAF1 81789 88 - 1 AGCUGGCGCAUAUGCUGCCGCCCCCACACCAC---------ACCACCACAUCC---UCAGCCACUGCUACACUUUCCACAACCAAUUUGGUGGUGCAGGA .((.(((((....)).))))).((..((((((---------............---..(((....)))..........(((.....)))))))))..)). ( -21.20) >DroEre_CAF1 83562 88 - 1 AGCCGGCGCACAUGCUGCCGCCCCCACUCCAGCACAUCCAC---------UGU---GCUACCACUGCUACACUUUCCACAGCCAAUUUGGUGGUGCAGGA ..(((((((....)).)))(((((((....((((((.....---------)))---)))......(((...........))).....))).)).)).)). ( -24.60) >consensus AGCUGGCGCAUAUGCUGCCGCCCCCACACCAC_________ACCACCACAUCC___GCAGCCACUGCUACACUUUCCACAACCAAUUUGGUGGUGCAGGA .((.(((((....)).)))))..........................................((((..((((...............))))..)))).. (-17.06 = -17.06 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:56 2006