Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,305,311 – 6,305,409 |
Length | 98 |
Max. P | 0.996634 |
Location | 6,305,311 – 6,305,409 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 79.78 |
Mean single sequence MFE | -28.45 |
Consensus MFE | -17.88 |
Energy contribution | -17.33 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.19 |
Mean z-score | -3.40 |
Structure conservation index | 0.63 |
SVM decision value | 2.73 |
SVM RNA-class probability | 0.996634 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6305311 98 + 27905053 CAAAUGUUACUUCCUCGGGAGCCCCCUCCUUUCAA-GGGGGUUUCCCCCUGGAGCCACCGCCCCUGGACCCCAUGGCUAACCCCCCCCUCUGGUUCCCU ................(((((((((((.......)-))))))))))....(((((((..(((..(((...))).))).............))))))).. ( -31.66) >DroSec_CAF1 70321 79 + 1 CAAAUGUUACUUCCUCGGGAGCCCCCUCCUCUCAAAGGGGGUUUCCCCCUUGAGGCACCGCCA--------------------CCGCCUCUGGUUCCCU ................(((((((...........(((((((...)))))))(((((.......--------------------..))))).))))))). ( -31.60) >DroSim_CAF1 76111 79 + 1 CAAAUGUUACUUCCUCGGGAGUCCCCUCCUCUCAAAGAGGGUUUCCCCCUUGAGCCACCGCCA--------------------CCGCCUCUGGUUCCCU ................(((((..(((((........))))).)))))....((((((..((..--------------------..))...))))))... ( -22.10) >consensus CAAAUGUUACUUCCUCGGGAGCCCCCUCCUCUCAAAGGGGGUUUCCCCCUUGAGCCACCGCCA____________________CCGCCUCUGGUUCCCU ................((((((((((((........))))).........((.((....))))............................))))))). (-17.88 = -17.33 + -0.55)
Location | 6,305,311 – 6,305,409 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 79.78 |
Mean single sequence MFE | -33.47 |
Consensus MFE | -22.87 |
Energy contribution | -23.32 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.05 |
Mean z-score | -2.56 |
Structure conservation index | 0.68 |
SVM decision value | 1.98 |
SVM RNA-class probability | 0.984475 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6305311 98 - 27905053 AGGGAACCAGAGGGGGGGGUUAGCCAUGGGGUCCAGGGGCGGUGGCUCCAGGGGGAAACCCCC-UUGAAAGGAGGGGGCUCCCGAGGAAGUAACAUUUG .(((..(((....((........)).)))..))).(((((....))))).(((((...(((((-((.....))))))))))))................ ( -38.90) >DroSec_CAF1 70321 79 - 1 AGGGAACCAGAGGCGG--------------------UGGCGGUGCCUCAAGGGGGAAACCCCCUUUGAGAGGAGGGGGCUCCCGAGGAAGUAACAUUUG ......((.((((((.--------------------......))))))..(((((...((((((((....)))))))))))))..))............ ( -34.80) >DroSim_CAF1 76111 79 - 1 AGGGAACCAGAGGCGG--------------------UGGCGGUGGCUCAAGGGGGAAACCCUCUUUGAGAGGAGGGGACUCCCGAGGAAGUAACAUUUG .......((((.((..--------------------(..((....((((((((((....)))))))))).((((....))))))..)..))....)))) ( -26.70) >consensus AGGGAACCAGAGGCGG____________________UGGCGGUGGCUCAAGGGGGAAACCCCCUUUGAGAGGAGGGGGCUCCCGAGGAAGUAACAUUUG .(((.(((................................)))..)))..(((((...((((((((....)))))))))))))................ (-22.87 = -23.32 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:53 2006