Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,297,023 – 6,297,122 |
Length | 99 |
Max. P | 0.574635 |
Location | 6,297,023 – 6,297,122 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 77.75 |
Mean single sequence MFE | -32.97 |
Consensus MFE | -19.67 |
Energy contribution | -19.70 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.05 |
Mean z-score | -1.48 |
Structure conservation index | 0.60 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574635 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6297023 99 - 27905053 GGUUUUGCUUAUGAGUGGUACAAAUGUUUUAGGCCACAAUUGGAGCACUUCUGUUUGACAGUGCGUAUGAUUUAUG--CGCCUGCUGUU----------GCAGCUACAUCU-------- .....(((((....(((((..((.....))..))))).....)))))...((((..(((((((((((((...))))--)))..))))))----------))))........-------- ( -26.10) >DroVir_CAF1 66852 102 - 1 G-C----CUCAUGAGUUGUACAAAUGUUUUGGGCCACAAUUGGAGCACUUCUGUUUGACAGUGCGUAUGAUUUAUGUGUGCCGGCUGUUUGUUGCUC----AGUGGAAGCU-------- (-(----.((.(((((...(((((((((...(((((((((((..(((((((.....)).)))))...))))...)))).)))))).)))))).))))----)...)).)).-------- ( -30.90) >DroPse_CAF1 60162 116 - 1 GGGC-CGCUCAUGAGUUGUACAAAUGUUUUAGGCCACAAUUGGAGCACUUCUGUUUGACAGUGCGUAUGAUUUAUG--UGCCUGCUGUUUGUCGUUGGUGUAACUGCCUCUGCUCCAGC .(((-.((.(((((((..(((............(((....))).(((((((.....)).))))))))..)))))))--.))..))).......(((((.(((........))).))))) ( -34.90) >DroWil_CAF1 143452 115 - 1 UGGUUGGACCAUGAGUUGUACAAAUGUUUUAGGCCACAAUUGGAGCACUUCUGUUUGACAGUGCGUAUGAUUUAUG--UGCCUGCUGUUUGUCGCUGC--AAACUGCAACUGGUCCGAC ..((((((((((((((..(((............(((....))).(((((((.....)).))))))))..)))))).--....(((.((((((....))--)))).)))...)))))))) ( -39.90) >DroMoj_CAF1 92591 101 - 1 G-C----CUCAUGAGUUGUACAAAUGUUUUGGGCCACAAUUGGAGCACUUCUGUUUGACAGUGCGUAUGAUUUAUGAGUGCCUGCUGCUUGCUGUUU----GCUGUUAGC--------- (-(----(((((((((..(((............(((....))).(((((((.....)).))))))))..))))))))).))..((((...((.....----))...))))--------- ( -32.30) >DroPer_CAF1 65348 116 - 1 GGGC-CACUCAUGAGUUGUACAAAUGUUUUAGGCCACAAUUGGAGCACUUCUGUUUGACAGUGCGUAUGAUUUAUG--UGCCUGCUGUUUGUCGUUGGUGUAACUGCCUCUGCUCCAGC ((((-....(((((((..(((............(((....))).(((((((.....)).))))))))..)))))))--.))))..........(((((.(((........))).))))) ( -33.70) >consensus GGG___GCUCAUGAGUUGUACAAAUGUUUUAGGCCACAAUUGGAGCACUUCUGUUUGACAGUGCGUAUGAUUUAUG__UGCCUGCUGUUUGUCGUUG____AACUGCAUCU________ .........((((((((((((............(((....))).(((((((.....)).)))))))))))))))))........................................... (-19.67 = -19.70 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:51 2006