Locus 2206

Sequence ID 3R_DroMel_CAF1
Location 6,296,512 – 6,296,602
Length 90
Max. P 0.827405
window3583

overview

Window 3

Location 6,296,512 – 6,296,602
Length 90
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 93.40
Mean single sequence MFE -13.80
Consensus MFE -12.35
Energy contribution -12.35
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.45
Structure conservation index 0.89
SVM decision value 0.70
SVM RNA-class probability 0.827405
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6296512 90 - 27905053
UCCAGACAGUUCUGGCGACACCUGCCAACGCCUACAAAUGUAAUUUAUGGCUCUCCCGCAUUAUGCACACCAGCUCACACA--CACACACCA
........(..((((.(......((((.....(((....))).....))))......((.....)).).))))..).....--......... ( -13.90)
>DroSec_CAF1 61627 88 - 1
UCCAGACAGUUCUGGCGACACCUGCCAACGCCUACAAAUGUAAUUUAUGGCUCUCCCGCAUUAUGCACACCAGCUCACAC----ACACACCA
........(..((((.(......((((.....(((....))).....))))......((.....)).).))))..)....----........ ( -13.90)
>DroSim_CAF1 67157 88 - 1
UCCAGACAGUUCUGGCGACACCUGCCAACGCCUACAAAUGUAAUUUAUGGCUCUCCCGCAUUAUGCACACCAGCUCACAC----ACACACCA
........(..((((.(......((((.....(((....))).....))))......((.....)).).))))..)....----........ ( -13.90)
>DroEre_CAF1 69321 92 - 1
UCCAGACAGUUCUGGCGACACCUGCCAACGCCUACAAAUGUAAUUUAUGGCUCUCCCGCAUUAUGCACACCAGCUCACACACACACACACCA
........(..((((.(......((((.....(((....))).....))))......((.....)).).))))..)................ ( -13.90)
>DroWil_CAF1 142961 84 - 1
UUCAGACAGCUCUGGCGACACCUGCCAACGCCUACAAAUGUAAUUUAUGGCUCUCCCGCAUUAUGCACACCAACAA--------ACACACCA
..((((....))))(((......((((.....(((....))).....)))).....))).................--------........ ( -12.30)
>DroAna_CAF1 65561 86 - 1
UCCAGACAGUUCUGGCGACACCUGCCAACGCCUACAAAUGUAAUUUAUGGCCCUCCCGCAUUAUGCACACCAGCACACAC----ACACAC--
........((.((((.(......((((.....(((....))).....))))......((.....)).).)))).))....----......-- ( -14.90)
>consensus
UCCAGACAGUUCUGGCGACACCUGCCAACGCCUACAAAUGUAAUUUAUGGCUCUCCCGCAUUAUGCACACCAGCUCACAC____ACACACCA
..((((....))))(((......((((.....(((....))).....)))).....)))................................. (-12.35 = -12.35 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:50 2006