Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,291,694 – 6,291,785 |
Length | 91 |
Max. P | 0.966504 |
Location | 6,291,694 – 6,291,785 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 73.40 |
Mean single sequence MFE | -34.80 |
Consensus MFE | -22.27 |
Energy contribution | -23.27 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.19 |
Mean z-score | -1.59 |
Structure conservation index | 0.64 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.919461 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6291694 91 + 27905053 --------------GUUGGCGUGGAUUACCGGGCCAAAAGCGGAGCAGAGCUCCAA-AAGAACCCGGCUCGGG------------AUCGGGAUCCAAAGACAGGAGCAGAGCUCCCGA --------------.(((((.(((....))).)))))..(.(((((...(((((..-..((.((((...))))------------.))((...)).......)))))...)))))).. ( -36.60) >DroSec_CAF1 56783 91 + 1 --------------GUUGGCGUGGAUUACCGGGCCAAAAGCGGAGCAGAGCCCCAA-AAGAACCCGGCUCGGG------------AUCGGGAUCCAAAGACAGGAGCAGAGCUCCCGA --------------.(((((.(((....))).)))))..(.(((((...(((((..-..((.((((...))))------------.))))).(((.......)))))...)))))).. ( -32.70) >DroSim_CAF1 62363 91 + 1 --------------GUUGGCGUGGAUUACCGGGCCAAAAGCGGAGCAGAGCUCCAA-AAGAACCCGGCUCGGG------------AUCGGGAUCCAAAGACAGGAGCAGAGCUCCCGA --------------.(((((.(((....))).)))))..(.(((((...(((((..-..((.((((...))))------------.))((...)).......)))))...)))))).. ( -36.60) >DroEre_CAF1 62444 116 + 1 GUUGCCAGUUAACAGUUGGCGUGGAUUACCGGGCCAAAUGCGGAGCAGAGCACCAA-AAGAGCCCGGCUCGGGAUCGGGAUCGGGAU-GGGAUCCAAAGACAGGAGCAGCGCUCCCGA ((((((((.......))))).((((((.(((..((..((.(.((((.(.((.....-....)).).)))).).))..))..)))...-..))))))..))).(((((...)))))... ( -39.90) >DroYak_CAF1 59510 105 + 1 GUUUCCA-------GUUGGCGUGGAUUACCGGGCCAAAUGCGGAGCAGAGCACCAA-AAGACCAC-----GGGAUGGGGAUCGGAAUCGGGAUCCAAAGACAGGAGCAGAGCUCCCGA .....((-------.(((((.(((....))).))))).)).(((((...((.((..-....(((.-----....)))(((((........))))).......)).))...)))))... ( -34.50) >DroAna_CAF1 61098 81 + 1 ---------------UUGGCGUGGAUUACCCGGCCAAAA-CGGAGCCUGACUGAACGGAAAAUCGAGCUGGAG------------AC-G---ACCGAGUUCAGG-----AGCUCCCGA ---------------(((((.(((.....))))))))..-.(((((....((((((......(((.(.((...------------.)-)---.)))))))))).-----.)))))... ( -28.50) >consensus ______________GUUGGCGUGGAUUACCGGGCCAAAAGCGGAGCAGAGCUCCAA_AAGAACCCGGCUCGGG____________AUCGGGAUCCAAAGACAGGAGCAGAGCUCCCGA ...............(((((.(((....))).)))))....(((((.(((((.............)))))......................(((.......))).....)))))... (-22.27 = -23.27 + 1.00)
Location | 6,291,694 – 6,291,785 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 73.40 |
Mean single sequence MFE | -33.53 |
Consensus MFE | -22.95 |
Energy contribution | -24.87 |
Covariance contribution | 1.92 |
Combinations/Pair | 1.16 |
Mean z-score | -1.70 |
Structure conservation index | 0.68 |
SVM decision value | 1.60 |
SVM RNA-class probability | 0.966504 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6291694 91 - 27905053 UCGGGAGCUCUGCUCCUGUCUUUGGAUCCCGAU------------CCCGAGCCGGGUUCUU-UUGGAGCUCUGCUCCGCUUUUGGCCCGGUAAUCCACGCCAAC-------------- .(((((((...)))))))....(((((..((..------------..)).((((((((...-.((((((...)))))).....)))))))).))))).......-------------- ( -34.70) >DroSec_CAF1 56783 91 - 1 UCGGGAGCUCUGCUCCUGUCUUUGGAUCCCGAU------------CCCGAGCCGGGUUCUU-UUGGGGCUCUGCUCCGCUUUUGGCCCGGUAAUCCACGCCAAC-------------- .(((((((...)))))))....(((((..((..------------..)).((((((((...-.((((((...)))))).....)))))))).))))).......-------------- ( -33.80) >DroSim_CAF1 62363 91 - 1 UCGGGAGCUCUGCUCCUGUCUUUGGAUCCCGAU------------CCCGAGCCGGGUUCUU-UUGGAGCUCUGCUCCGCUUUUGGCCCGGUAAUCCACGCCAAC-------------- .(((((((...)))))))....(((((..((..------------..)).((((((((...-.((((((...)))))).....)))))))).))))).......-------------- ( -34.70) >DroEre_CAF1 62444 116 - 1 UCGGGAGCGCUGCUCCUGUCUUUGGAUCCC-AUCCCGAUCCCGAUCCCGAGCCGGGCUCUU-UUGGUGCUCUGCUCCGCAUUUGGCCCGGUAAUCCACGCCAACUGUUAACUGGCAAC ((((((.((..((....))....(((((..-.....))))))).))))))((((((((...-..(((((........))))).)))))))).......((((.........))))... ( -39.40) >DroYak_CAF1 59510 105 - 1 UCGGGAGCUCUGCUCCUGUCUUUGGAUCCCGAUUCCGAUCCCCAUCCC-----GUGGUCUU-UUGGUGCUCUGCUCCGCAUUUGGCCCGGUAAUCCACGCCAAC-------UGGAAAC .(((((((...))))))).....(((((........)))))(((...(-----((((....-((((.(((.(((...)))...)))))))....))))).....-------))).... ( -32.10) >DroAna_CAF1 61098 81 - 1 UCGGGAGCU-----CCUGAACUCGGU---C-GU------------CUCCAGCUCGAUUUUCCGUUCAGUCAGGCUCCG-UUUUGGCCGGGUAAUCCACGCCAA--------------- ...((((((-----.((((((..(((---(-(.------------........)))))....))))))...)))))).-..(((((..((....))..)))))--------------- ( -26.50) >consensus UCGGGAGCUCUGCUCCUGUCUUUGGAUCCCGAU____________CCCGAGCCGGGUUCUU_UUGGAGCUCUGCUCCGCUUUUGGCCCGGUAAUCCACGCCAAC______________ .(((((((...)))))))..............................((((.(((((((....))))))).)))).....(((((..((....))..)))))............... (-22.95 = -24.87 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:49 2006