Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,290,372 – 6,290,470 |
Length | 98 |
Max. P | 0.571449 |
Location | 6,290,372 – 6,290,470 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 77.09 |
Mean single sequence MFE | -23.73 |
Consensus MFE | -15.71 |
Energy contribution | -15.60 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.09 |
Mean z-score | -1.17 |
Structure conservation index | 0.66 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.571449 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6290372 98 + 27905053 GCAGUUAUUAGGUUGUUAGUGGCAUAGUCCCUGCCAUUCUCAUCGAUUUAUGCACUUCACGGCAUCUCGUAAUGUGGGUU--UUUU----C-GCCU-UCCUUCCCU------- .........((((((..(((((((.......)))))))..))..((...((.(((...((((....))))...))).)).--...)----)-))))-.........------- ( -19.00) >DroVir_CAF1 58571 81 + 1 GCAGUUAUUAGGUUGUUAGUGGCAUAGUCUCUGCCAUUUUCAUCGAUUUAUGCACUUCAAAGCAUC---UAAUGUGGGUU--UUUU--------------------------- ((...(((((((.((..(((((((.......)))))))..)).).....((((........)))))---)))))...)).--....--------------------------- ( -16.50) >DroPse_CAF1 52584 106 + 1 GCAGUUAUUAGGUUGUUAGUGGCAUAGUCCAUGCCAUUUUCAUCGAUUUAUGCACUUCACAGCAUCUCGUAAUGUGGGUU--UUUU----C-GAACGUACUCGUACGAGUACU (((...(((.(((.(..((((((((.....))))))))..)))))))...)))............((((((..(((.(((--(...----.-)))).)))...)))))).... ( -28.20) >DroWil_CAF1 135958 94 + 1 GCAGUUAUUAGGUUGUUAGUGGCAUAGUCCAUGCCAUUUUCAUCGAUUUAUGCACUUCACAGCAUCU---AAUGUGGUUGCUCUUG----G-GCCA-UCCCCA---------- ((((.(((((((.((..((((((((.....))))))))..)).).....((((........))))))---))))...))))...((----(-(...-..))))---------- ( -24.10) >DroMoj_CAF1 83339 104 + 1 GCAGUUAUUAGGUUGUUAGUGGCGUAGUCUCUGCCAUUUCCAUCGAUUUAUGCACUUCACAGCAUC---UAAUGUGGCGU--UCUUUUUUCAGUGU-UCUCUGCU-CAG--CU ((((....(((((((..(((((((.......))))))).....))))))).((((((((((.....---...)))))...--.........)))))-...)))).-...--.. ( -21.30) >DroPer_CAF1 57730 106 + 1 GCAGUUAUUAGGUUGUUAGUGGCAUAGUCCAUGCCAUUUUCAUCGAUUUAUGCACUUCACAGCAUCUCGUAAUGUGGGUU--UUUU----C-GAACGUACUCGUACGAGUGCU (((...(((.(((.(..((((((((.....))))))))..)))))))...))).......((((.((((((..(((.(((--(...----.-)))).)))...)))))))))) ( -33.30) >consensus GCAGUUAUUAGGUUGUUAGUGGCAUAGUCCAUGCCAUUUUCAUCGAUUUAUGCACUUCACAGCAUCU__UAAUGUGGGUU__UUUU____C_GAAC_UCCUCG__________ (((...(((.(((.(..(((((((.......)))))))..)))))))...)))...(((((...........))))).................................... (-15.71 = -15.60 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:47 2006