| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,288,060 – 6,288,155 |
| Length | 95 |
| Max. P | 0.863621 |
| Location | 6,288,060 – 6,288,155 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 78.51 |
| Mean single sequence MFE | -22.92 |
| Consensus MFE | -14.92 |
| Energy contribution | -15.27 |
| Covariance contribution | 0.35 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.863621 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6288060 95 - 27905053 GCUGUAAGUGUCAGUUGUUGCUGAUAAUUAGCGAUUAUGGACGACAGCACACAGUCACAACUGUACUGCUAAAGUA--UCAAUAAUAAAAAGCAUAG----------- (((((...((((....((((((((...))))))))....)))))))))..(((((....)))))..((((....((--(.....)))...))))...----------- ( -23.30) >DroSec_CAF1 53121 92 - 1 GCUGUAAGUGUCAGUUGUUGCUGAUAAUUAGCGAUUAAGGACGACAGCACACAGUCACAACUGUACUACUAAAGUA--UCAAUAAUAGCAAGCA-------------- (((((.((((.(((((((((((((...)))))))........(((........))).))))))))))((....)).--......))))).....-------------- ( -21.70) >DroSim_CAF1 56275 91 - 1 GCUGUAAGUGUCAGUUGUUGCUGAUAAUUAGCGAUUA-GGACGACAGCACACAGUCACAACUGUACUGCUAAAGUA--UCAAUAAUAGCAAGCA-------------- (((((..(((((....((((((((...))))))))..-.))).))((((.(((((....)))))..))))......--......))))).....-------------- ( -24.20) >DroEre_CAF1 58713 105 - 1 GCUGUAAGUGUCAGUUGUUGC-GAUAAUUAGCGAUUAAGGACGACGGCACACAGUCACAACUGUACUGCUAAAGUA--UCAAUAAUGACUAGCACAGCUUACGGAACU .(((((((((((....(((((-........)))))....)))....((....(((((.....(((((.....))))--)......))))).))...)))))))).... ( -27.10) >DroWil_CAF1 66733 91 - 1 AAUGUAAGUGUCAGUUGGUGCUGAUAAUUAGCGAUUAAAAUUGA--GCAUA----CACAACUGUACCAUUGAAUGAAAUUUAUGGUUAAAACCACGA----------- .......(((.(((((((((((.(.................).)--)))).----..)))))).(((((.((......)).)))))......)))..----------- ( -15.33) >DroYak_CAF1 55662 106 - 1 GCUGUAAGUGUCAGUUGUUGCUGAUAAUUAGCGAUUAAGGACGACAGCACACAGUCACAACUGUACUGCUGAAAUA--UCAAUAAUAACAAAAAAAAGUUACCGAACC ((((....(((((((....)))))))..))))......((....(((((.(((((....)))))..))))).....--.......((((........))))))..... ( -25.90) >consensus GCUGUAAGUGUCAGUUGUUGCUGAUAAUUAGCGAUUAAGGACGACAGCACACAGUCACAACUGUACUGCUAAAGUA__UCAAUAAUAACAAGCA_A____________ ...(((.(((.(((((((((((((...)))))))........(((........))).))))))))))))....................................... (-14.92 = -15.27 + 0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:46 2006