Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,286,338 – 6,286,432 |
Length | 94 |
Max. P | 0.873663 |
Location | 6,286,338 – 6,286,432 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 80.11 |
Mean single sequence MFE | -16.95 |
Consensus MFE | -12.95 |
Energy contribution | -13.32 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.14 |
Mean z-score | -1.86 |
Structure conservation index | 0.76 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.873663 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6286338 94 - 27905053 UUGAAACUCCCUGUCAUUUUCGCCAUUACUUGGAAACCAAAAAGUGGUGAAACGAGCCAGCAAAACUAUAUAUAAAAUGCAAAUAUAUAAAUAG ..........(((.(..((((((((((..((((...))))..))))))))))...).)))......(((((((.........)))))))..... ( -16.70) >DroSec_CAF1 51417 94 - 1 UUGAAACUCCCUGUCAUUUUCGCCUUUAUUUGGAAACCAAAAAGUGGUGAAACGAGUUAGUAAAAUUAUAUAUAUAAUGCAAAUAUAUAAAUAG ....(((((........(((((((.((.(((((...))))).)).))))))).))))).......((((((((.........)))))))).... ( -15.50) >DroEre_CAF1 56984 82 - 1 UAGA-ACUCUCUGUCAGUUUCGCCAUUAUUCGGAAACCAAAAAGUGGUGAGCCCAGC-----------UAUAUAAAAUGCAAAUAUAUAAAUAC ((((-....)))).....(((((((((....(....).....)))))))))....((-----------..........)).............. ( -12.00) >DroYak_CAF1 53787 83 - 1 UGGAAACUCUCUGUCAGAUUCGCCAUUAUUUGGAAACCAAAAAGUGGCGAACCGAGA-----------UACAUAAAAUGCAAAUGCAUAAAUAU .(....)((((.((.....((((((((.(((((...))))).)))))))))).))))-----------........((((....))))...... ( -23.60) >consensus UUGAAACUCCCUGUCAGUUUCGCCAUUAUUUGGAAACCAAAAAGUGGUGAAACGAGC___________UAUAUAAAAUGCAAAUAUAUAAAUAG ..................(((((((((.(((((...))))).)))))))))........................................... (-12.95 = -13.32 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:45 2006