Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,286,160 – 6,286,259 |
Length | 99 |
Max. P | 0.524990 |
Location | 6,286,160 – 6,286,259 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 80.04 |
Mean single sequence MFE | -23.34 |
Consensus MFE | -12.44 |
Energy contribution | -14.20 |
Covariance contribution | 1.76 |
Combinations/Pair | 1.05 |
Mean z-score | -1.86 |
Structure conservation index | 0.53 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524990 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6286160 99 + 27905053 AAAAGUCCACUUAUCGCUGACAUAUGGAUGACAUGCAGGAAUUCCUAGAAAAUUGUCAGUAAUGGUGGUCAUUUCGGACUGGAAAGUAUUAUAAAAGA-A----- ....(.(((((.((..((((((((((.....)))).(((....))).......))))))..))))))).).......(((....)))...........-.----- ( -24.60) >DroSec_CAF1 51234 97 + 1 AAAAGUCCACUUACCGCUGACAUAUGGAUGACAAGCAGGAAUUCCUAGAAAGUUGCCAGUAAUGGUGGUCAUUUCGAACUGGAAAGUAUUAUACAA---A----- ........((((.(((((..(((....)))...)))(((....))).((((((..(((....)))..).).)))).....)).)))).........---.----- ( -20.20) >DroSim_CAF1 54375 97 + 1 AAAAGUCCACUUACCGCUGACAUAUGGAUGACAUGCAGGAAUUCCUAGAAAAUUGUCAGUAAUGGUGGUCAUUUCGAACUGGGAAGUAUUAUAAAA---A----- ....(.(((((....(((((((((((.....)))).(((....))).......)))))))...))))).)(((((.......))))).........---.----- ( -23.20) >DroEre_CAF1 56734 95 + 1 -AAAAUCCACUUACCGCUGACAUUUGGAUGACAUGCGGAAAUUCCUAGAAAAUUAUCAGUAAUGGUGGUCGUUUAGG----GA---UAUUAUUAAAUCAC--UUG -............((((((.(((....))).)).))))..(((((((((..(((((((....)))))))..))))))----))---).............--... ( -25.20) >DroYak_CAF1 53520 98 + 1 CAAAGUCCACUUACCGCUGACAUAUGGAUGACAUGCGGAAAUUCCUGGAAAAUGAUCAGUAAUGAUGGUCAUUUAAG----GU---GGUUAUUAAAUUACUCUUG ......((((((.((((((.(((....))).)).))))...........(((((((((.......))))))))).))----))---))................. ( -23.50) >consensus AAAAGUCCACUUACCGCUGACAUAUGGAUGACAUGCAGGAAUUCCUAGAAAAUUGUCAGUAAUGGUGGUCAUUUCGGACUGGAAAGUAUUAUAAAA___A_____ ....(.(((((....(((((((((((.....)))).(((....))).......)))))))...))))).)................................... (-12.44 = -14.20 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:44 2006