Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,285,757 – 6,285,851 |
Length | 94 |
Max. P | 0.868007 |
Location | 6,285,757 – 6,285,851 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 87.82 |
Mean single sequence MFE | -37.08 |
Consensus MFE | -26.34 |
Energy contribution | -27.30 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.04 |
Mean z-score | -2.42 |
Structure conservation index | 0.71 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.868007 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6285757 94 - 27905053 GCAACUGGCAACGUGCGGCAUUUGCAACUGGUGCAGCGAUAUUGCGG----------UGCAGCUUGGCUCUUAUGAGCAGCAAAUGCAGCGCGACUAAUGCGCC (((..(((...(((((.((((((((....(.((((.((......)).----------)))).)...((((....)))).)))))))).))))).))).)))... ( -39.50) >DroSec_CAF1 50833 91 - 1 ---ACUUGCAACGUGCGGCAUUUGCAACUGGUGCAGCAAUAUUGCGG----------UGCAGCUUGGCUCUUAUGAGCAGCAAAUGCAGCGCGACUAAUGCGCC ---....(((.(((((.((((((((....(.(((((((....)))..----------)))).)...((((....)))).)))))))).))))).....)))... ( -35.70) >DroSim_CAF1 53974 91 - 1 ---ACUUGCAACGUGCGGCAUUUGCAACUGGUGCAGCGAUAUUGCGG----------UGCAGCUUGGCUCUUAUGAGCAGCAAAUGCAGCGCGACUAAUGCGCC ---....(((.(((((.((((((((....(.((((.((......)).----------)))).)...((((....)))).)))))))).))))).....)))... ( -38.10) >DroEre_CAF1 56346 94 - 1 GCAACUGGCAACGUGCGGCAUUUGCAACUGGUGCAGCGAUAUGGCGG----------UGCAACUCGGCUCUUAUGAGCAGCAAAUGCAGCGCGACUAAUGCGCC (((..(((...(((((.((((((((..(.((((((.((......)).----------))).))).)((((....)))).)))))))).))))).))).)))... ( -38.50) >DroYak_CAF1 53118 102 - 1 GCCACUGACAACUGGCA--ACUUGCAACUGGUGCAGCGAUAUUGCGGCGCAACUGGGUGCAACUGGGCUCUUAUGAGCAGCAAAUGCAGCGCAACUAAUGCGCC ((((........)))).--..((((..(..((((((.....)))).((((......)))).))..)((((....)))).)))).....(((((.....))))). ( -33.60) >consensus GC_ACUGGCAACGUGCGGCAUUUGCAACUGGUGCAGCGAUAUUGCGG__________UGCAGCUUGGCUCUUAUGAGCAGCAAAUGCAGCGCGACUAAUGCGCC ...........(((((.((((((((..(..(((((((......))............))).))..)((((....)))).)))))))).)))))........... (-26.34 = -27.30 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:43 2006