Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 885,184 – 885,300 |
Length | 116 |
Max. P | 0.924488 |
Location | 885,184 – 885,300 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -23.90 |
Consensus MFE | -23.90 |
Energy contribution | -23.90 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.03 |
Structure conservation index | 1.00 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.924488 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 885184 116 + 27905053 ----GUUGAUUUUGAAAUUUGUAUUCAAGCGUUAAUUGGCUUUGCUCAUUAGCGGGUUUCUUUAAUGCUAUUAACUUUAUUUGCUGUUUAUUUUAUUAGUAAUGCGGCAUUGUGUUUCCU ----((((((..((((.......))))((((((((..(((((.(((....))))))))...))))))))))))))......(((((((((((.....))))).))))))........... ( -23.90) >DroSec_CAF1 53073 120 + 1 UUUUGUUGAUUUUGAAAUUUGUAUUCAAGCGUUAAUUGGCUUUGCUCAUUAGCGGGUUUCUUUAAUGCUAUUAACUUUAUUUGCUGUUUAUUUUAUUAGUAAUGCGGCAUUGUGUUUCCU ....((((((..((((.......))))((((((((..(((((.(((....))))))))...))))))))))))))......(((((((((((.....))))).))))))........... ( -23.90) >DroSim_CAF1 52557 120 + 1 UUUUGUUGAUUUUGAAAUUUGUAUUCAAGCGUUAAUUGGCUUUGCUCAUUAGCGGGUUUCUUUAAUGCUAUUAACUUUAUUUGCUGUUUAUUUUAUUAGUAAUGCGGCAUUGUGUUUCCU ....((((((..((((.......))))((((((((..(((((.(((....))))))))...))))))))))))))......(((((((((((.....))))).))))))........... ( -23.90) >consensus UUUUGUUGAUUUUGAAAUUUGUAUUCAAGCGUUAAUUGGCUUUGCUCAUUAGCGGGUUUCUUUAAUGCUAUUAACUUUAUUUGCUGUUUAUUUUAUUAGUAAUGCGGCAUUGUGUUUCCU ....((((((..((((.......))))((((((((..(((((.(((....))))))))...))))))))))))))......(((((((((((.....))))).))))))........... (-23.90 = -23.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:00 2006