Locus 22

Sequence ID 3R_DroMel_CAF1
Location 192,331 – 192,426
Length 95
Max. P 0.890283
window38

overview

Window 8

Location 192,331 – 192,426
Length 95
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 87.31
Mean single sequence MFE -9.98
Consensus MFE -7.20
Energy contribution -7.40
Covariance contribution 0.20
Combinations/Pair 1.11
Mean z-score -2.37
Structure conservation index 0.72
SVM decision value 0.96
SVM RNA-class probability 0.890283
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 192331 95 - 27905053
UUUGUCUUCCUAUCUACAGUUGUAAUCUC---GCUUUACAAUUAAUUUUCUUUUCUUACAUAUUCAUGUGUAAUUUCCUCAAAAUUGCGAAUCCAUUU
..((..(((........((((((((....---...))))))))((((((......(((((((....))))))).......))))))..)))..))... ( -10.72)
>DroSec_CAF1 26375 98 - 1
UUUGUCUUCCUAUCUACAGUUGUAUUCUUUUUUCUUUACAAUUACUUUUCUUUUCUUACAUAUUCAUGUGUAAUUCCUUCAAAACUGAGAAACUUUUU
............(((.((((((((............)))................(((((((....))))))).........))))))))........ ( -10.30)
>DroSim_CAF1 26796 98 - 1
UUUGUCUUCCUAUCUACAGUUGUAUUCUUUUUUCUUUACAAUUACUUUUCUUUUCUUACAUAUUCAUGUGUAAUUCCUUCAAAACUGAGAAACUUUUU
............(((.((((((((............)))................(((((((....))))))).........))))))))........ ( -10.30)
>DroEre_CAF1 28486 95 - 1
UUUGUCUCCCUAUCUACAGUUGUAU---UUUUGCUUUAUAAUUACUUUUCUUUUCUUACAUAUUCAUGUGUAAUUCCCUUUAAAUUGAGAAACUUUUU
....((((.........(((((((.---........)))))))............(((((((....))))))).............))))........ (  -9.20)
>DroYak_CAF1 27375 93 - 1
UUUGUCUCCCUAUCUACAGUUGC-U---ACUUGCUUUACAAUUACUUUUCCUUUCUUACAUAUUCAUGUGUAAUUCCCUUUAAAUUGAGAAA-UUUUU
............(((.(((((((-.---....)).....................(((((((....))))))).........))))))))..-..... (  -9.40)
>consensus
UUUGUCUUCCUAUCUACAGUUGUAUUCUUUUUGCUUUACAAUUACUUUUCUUUUCUUACAUAUUCAUGUGUAAUUCCCUCAAAAUUGAGAAACUUUUU
....((((.........(((((((............)))))))............(((((((....))))))).............))))........ ( -7.20 =  -7.40 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:28 2006