Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,275,661 – 6,275,756 |
Length | 95 |
Max. P | 0.996328 |
Location | 6,275,661 – 6,275,756 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 70.89 |
Mean single sequence MFE | -22.40 |
Consensus MFE | -9.78 |
Energy contribution | -9.78 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.48 |
Structure conservation index | 0.44 |
SVM decision value | 2.68 |
SVM RNA-class probability | 0.996328 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6275661 95 + 27905053 UUUGGUGCGUGGAAUAGUUAAGUAACUAUUUUCUUGCACUGUG-GAAAAAAAAC-GGGUCUUAGUAG-AACCACU----UUUUGUUUAAUAUAAAGUUGUUA ...((((((.(((((((((....)))))))))..))))))...-.......(((-((.(((....))-).))(((----((.(((...))).))))).))). ( -19.30) >DroSec_CAF1 40909 94 + 1 UUUGGUGCGUGGAAUAGUUAAGUAACUAUUUUCUUGCACUGUG-AAAAA--UACAGGGUAUUAGUAG-AACCACU----UUCUGUUUAAUAUAUAGUGGUUA ...((((((.(((((((((....)))))))))..))))))...-...((--(((...))))).....-(((((((----...(((.....))).))))))). ( -21.90) >DroEre_CAF1 46288 84 + 1 UUUGGUGCGUGGAAUAGCAA----ACUAUUUUCUUGCACAGCG-GAAAA--AGC-UGCUAGUAGUUG-AA-CACU----AUUUGUUUACU----ACUUUUUA ....(((((.(((((((...----.)))))))..)))))((((-(....--..)-))))((((((.(-((-((..----...))))))))----)))..... ( -24.10) >DroYak_CAF1 42711 92 + 1 UUUGGUGCGUGGAAUAGCAAAGUAACUAUUUUCUUGCACAGUGGGAAAA--AGU-UGCUAGUAGUUG-GACCACU----AUUUGCUUAAU--AAACUUGUUA ........((((..((((..(((((((.((((((..(...)..))))))--)))-))))....))))-..)))).----...........--.......... ( -21.90) >DroAna_CAF1 46771 92 + 1 UUUGGUGCGUGGAAUAGUGAAGUAACUAU-UUCAUGCACUGCU-GAAAA--AAA-UGGUAGUGAUAUGGGCUAAAAAACAAAUUAA-----AAAAGGGAUGA ((((((((((((((((((......)))))-)))))))((((((-.....--...-.)))))).......))))))...........-----........... ( -24.80) >consensus UUUGGUGCGUGGAAUAGUAAAGUAACUAUUUUCUUGCACUGUG_GAAAA__AAC_UGGUAGUAGUAG_AACCACU____AUUUGUUUAAU__AAAGUUGUUA ....(((((.(((((((........)))).))).)))))............................................................... ( -9.78 = -9.78 + 0.00)
Location | 6,275,661 – 6,275,756 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 70.89 |
Mean single sequence MFE | -14.69 |
Consensus MFE | -7.46 |
Energy contribution | -7.42 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.10 |
Mean z-score | -2.26 |
Structure conservation index | 0.51 |
SVM decision value | 2.20 |
SVM RNA-class probability | 0.990181 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6275661 95 - 27905053 UAACAACUUUAUAUUAAACAAAA----AGUGGUU-CUACUAAGACCC-GUUUUUUUUC-CACAGUGCAAGAAAAUAGUUACUUAACUAUUCCACGCACCAAA ...................((((----(((((.(-((....))).))-)))))))...-....((((.....(((((((....)))))))....)))).... ( -14.30) >DroSec_CAF1 40909 94 - 1 UAACCACUAUAUAUUAAACAGAA----AGUGGUU-CUACUAAUACCCUGUA--UUUUU-CACAGUGCAAGAAAAUAGUUACUUAACUAUUCCACGCACCAAA .(((((((...............----)))))))-................--.....-....((((.....(((((((....)))))))....)))).... ( -14.66) >DroEre_CAF1 46288 84 - 1 UAAAAAGU----AGUAAACAAAU----AGUG-UU-CAACUACUAGCA-GCU--UUUUC-CGCUGUGCAAGAAAAUAGU----UUGCUAUUCCACGCACCAAA .....(((----(((((((...(----((((-..-....)))))(((-((.--.....-.)))))...........))----))))))))............ ( -18.30) >DroYak_CAF1 42711 92 - 1 UAACAAGUUU--AUUAAGCAAAU----AGUGGUC-CAACUACUAGCA-ACU--UUUUCCCACUGUGCAAGAAAAUAGUUACUUUGCUAUUCCACGCACCAAA .....(((..--...(((....(----(((((..-...))))))...-.))--)......)))((((.....((((((......))))))....)))).... ( -15.30) >DroAna_CAF1 46771 92 - 1 UCAUCCCUUUU-----UUAAUUUGUUUUUUAGCCCAUAUCACUACCA-UUU--UUUUC-AGCAGUGCAUGAA-AUAGUUACUUCACUAUUCCACGCACCAAA ...........-----...............................-...--.....-....((((.((.(-(((((......)))))).)).)))).... ( -10.90) >consensus UAACAACUUU__AUUAAACAAAU____AGUGGUU_CUACUACUACCA_GUU__UUUUC_CACAGUGCAAGAAAAUAGUUACUUAACUAUUCCACGCACCAAA ...............................................................((((.....((((((......))))))....)))).... ( -7.46 = -7.42 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:41 2006