Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,270,441 – 6,270,537 |
Length | 96 |
Max. P | 0.527720 |
Location | 6,270,441 – 6,270,537 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 81.38 |
Mean single sequence MFE | -24.70 |
Consensus MFE | -15.70 |
Energy contribution | -15.98 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.11 |
Mean z-score | -1.54 |
Structure conservation index | 0.64 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.527720 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6270441 96 - 27905053 UCCU------UGUUGUUC------------GGCUGCUGAUGUUGCUGCUGUGCAUGCAGGCGAUCAAAGCUCAGGGCAAUUAAUCAUUUUGUUUGCCCUUUACACCCAUUUAUU ((((------((((((.(------------(((.((.......)).)))).))).))))).)).........(((((((.(((.....))).)))))))............... ( -26.30) >DroVir_CAF1 37069 89 - 1 GCC-------UGCCGCU-----------CUU------GCUGUUGUUG-UGUGCAUGCAGGCGAUCAAAGCUCAGAGCAAUUAAUCAUUUUGUUUGCCCUUUACACCCAUUUAUU (((-------(((.((.-----------(..------((....))..-.).))..))))))....((((....((((((.........))))))...))))............. ( -19.00) >DroPse_CAF1 32612 108 - 1 UCCU------CGUUGUUCCAGUGCUACUCCUGCUGCUCCUGCUGCUGCUGUGCAUGCAGGCGAUCAAAGCUCAGGGCAAUUAAUCAUUUUGUUUGCCCUUUACACCCAUUUAUU ....------..........(((........(((.(.((((((((......))).))))).).....)))..(((((((.(((.....))).)))))))...)))......... ( -27.80) >DroGri_CAF1 52226 95 - 1 GCCUU-----UGCCACU-----------GUU--UGCUACUGCUGCUG-UGUGCAUGCAGGCGAUCAAAGCUCAGAGCAAUUAAUCAUUUUGUUUGCCCUUUACACCCAUUUAUU ((((.-----((((((.-----------((.--.((....)).)).)-)).)))...))))....((((....((((((.........))))))...))))............. ( -20.50) >DroAna_CAF1 42178 100 - 1 UCCU-GCUGAUGUUGCUC------------GGCUAUUGCU-UUGCUGCUGUGCAUGCAGGCGAUCAAAGCUCAGGGCAAUUAAUCAUUUUGUUUGCCCUUUACACCCAUUUAUU .(((-((((..((.((..------------(((....)))-..)).))....)).)))))............(((((((.(((.....))).)))))))............... ( -26.80) >DroPer_CAF1 37970 108 - 1 UCCU------CGUUGUUCCAGUGCUACUCCUGCUGCUCCUGCUGCUGCUGUGCAUGCAGGCGAUCAAAGCUCAGGGCAAUUAAUCAUUUUGUUUGCCCUUUACACCCAUUUAUU ....------..........(((........(((.(.((((((((......))).))))).).....)))..(((((((.(((.....))).)))))))...)))......... ( -27.80) >consensus UCCU______UGUUGCUC__________C_UGCUGCUGCUGCUGCUGCUGUGCAUGCAGGCGAUCAAAGCUCAGGGCAAUUAAUCAUUUUGUUUGCCCUUUACACCCAUUUAUU ......................................(((((((......))).))))((.......))..(((((((.(((.....))).)))))))............... (-15.70 = -15.98 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:34 2006