Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,266,346 – 6,266,458 |
Length | 112 |
Max. P | 0.941984 |
Location | 6,266,346 – 6,266,438 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.00 |
Mean single sequence MFE | -19.08 |
Consensus MFE | -15.60 |
Energy contribution | -15.60 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.48 |
Structure conservation index | 0.82 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.941984 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6266346 92 + 27905053 C------CCGAGCUGU---A-------------------UGUGCAUCCUCAAUUUCCCUUUUAUGUUAUUUUAAUUUUAUGUUAUUGUUAUGACACAAUGAAAAUAAAAUUGAAUUGACA .------..(((.(((---.-------------------...)))..))).............(((((.(((((((((((.(((((((......)))))))..))))))))))).))))) ( -18.90) >DroVir_CAF1 33732 95 + 1 A------GCGAACUGUUUUC-------------------UGUGCAUCCUCAAUUUCCUUUUUAUGUUAUUUUAAUUUUAUGUUAUUGUUAUGACACAAUGAAAAUAAAAUUGAAUUGACA .------(((....(....)-------------------..)))...................(((((.(((((((((((.(((((((......)))))))..))))))))))).))))) ( -16.30) >DroPse_CAF1 28202 102 + 1 CCCUCCCUUCAGCCAU---A---------------CGAGUAUGCAUCCUCAAUUUCCUUUUUAUGUUAUUUUAAUUUUAUGUUAUUGUUAUGACACAAUGAAAAUAAAAUUGAAUUGACA ...........((.((---(---------------....)))))...................(((((.(((((((((((.(((((((......)))))))..))))))))))).))))) ( -17.50) >DroGri_CAF1 48092 114 + 1 C------GGGAACUGUUUGCUGUUCAACUGUUCUAUAGCUGUGCAUCCUCAAUUUCCUUUUUAUGUUAUUUUAAUUUUAUGUUAUUGUUAUGACACAAUGAAAAUAAAAUUGAAUUGACA .------(((((.((..(((....((.((((...)))).)).)))....)).)))))......(((((.(((((((((((.(((((((......)))))))..))))))))))).))))) ( -25.10) >DroWil_CAF1 42933 87 + 1 -----------GCAGU---C-------------------CCUGCAUCCUCAAUUUCCUUUUUAUGUUAUUUUAAUUUUAUGUUAUUGUUAUGACACAAUGAAAAUAAAAUUGAAUUGACA -----------((((.---.-------------------.))))...................(((((.(((((((((((.(((((((......)))))))..))))))))))).))))) ( -19.20) >DroPer_CAF1 33536 102 + 1 CUCUCCCUUCAGCCAU---A---------------CGAGUAUGCAUCCUCAAUUUCCUUUUUAUGUUAUUUUAAUUUUAUGUUAUUGUUAUGACACAAUGAAAAUAAAAUUGAAUUGACA ...........((.((---(---------------....)))))...................(((((.(((((((((((.(((((((......)))))))..))))))))))).))))) ( -17.50) >consensus C______GCGAGCUGU___A___________________UGUGCAUCCUCAAUUUCCUUUUUAUGUUAUUUUAAUUUUAUGUUAUUGUUAUGACACAAUGAAAAUAAAAUUGAAUUGACA ...............................................................(((((.(((((((((((.(((((((......)))))))..))))))))))).))))) (-15.60 = -15.60 + -0.00)
Location | 6,266,358 – 6,266,458 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.92 |
Mean single sequence MFE | -19.38 |
Consensus MFE | -16.10 |
Energy contribution | -16.10 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.10 |
Structure conservation index | 0.83 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.917119 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6266358 100 + 27905053 GUGCAUCCUCAAUUUCCCUUUUAUGUUAUUUUAAUUUUAUGUUAUUGUUAUGACACAAUGAAAAUAAAAUUGAAUUGACACUGAUGUCCU----UGCUUCCUU---U------------- (..((((...((........)).(((((.(((((((((((.(((((((......)))))))..))))))))))).)))))..))))..).----.........---.------------- ( -17.90) >DroVir_CAF1 33747 113 + 1 GUGCAUCCUCAAUUUCCUUUUUAUGUUAUUUUAAUUUUAUGUUAUUGUUAUGACACAAUGAAAAUAAAAUUGAAUUGACACUGAAGCAUCUCGACAAUGCCUGUACGCCCCGA------- (((((..............(((((((((.(((((((((((.(((((((......)))))))..))))))))))).))))).))))((((.......)))).))))).......------- ( -23.80) >DroGri_CAF1 48126 103 + 1 GUGCAUCCUCAAUUUCCUUUUUAUGUUAUUUUAAUUUUAUGUUAUUGUUAUGACACAAUGAAAAUAAAAUUGAAUUGACACUGAAGCAUCUCGGCACCGCCUG----------------- ((((............((((...(((((.(((((((((((.(((((((......)))))))..))))))))))).)))))..)))).......))))......----------------- ( -21.01) >DroWil_CAF1 42940 113 + 1 CUGCAUCCUCAAUUUCCUUUUUAUGUUAUUUUAAUUUUAUGUUAUUGUUAUGACACAAUGAAAAUAAAAUUGAAUUGACACUGAUGUCCU----UGGCCCAAC---CCCCCAAUCCCCCC ..(((((...((........)).(((((.(((((((((((.(((((((......)))))))..))))))))))).)))))..)))))..(----(((......---...))))....... ( -17.90) >DroMoj_CAF1 52385 99 + 1 GUGCAUCCUCAAUUUCCUUUUUAUGUUAUUUUAAUUUUAUGUUAUUGUUAUGACACAAUGAAAAUAAAAUUGAAUUGACACUGAAGCGUCUCGACAACG--------------------- ................((((...(((((.(((((((((((.(((((((......)))))))..))))))))))).)))))..)))).............--------------------- ( -17.80) >DroPer_CAF1 33558 108 + 1 AUGCAUCCUCAAUUUCCUUUUUAUGUUAUUUUAAUUUUAUGUUAUUGUUAUGACACAAUGAAAAUAAAAUUGAAUUGACACUGAUGUCCU----UACUUCCUU---C-----AGCCCUUA .......................(((((.(((((((((((.(((((((......)))))))..))))))))))).)))))((((......----........)---)-----))...... ( -17.84) >consensus GUGCAUCCUCAAUUUCCUUUUUAUGUUAUUUUAAUUUUAUGUUAUUGUUAUGACACAAUGAAAAUAAAAUUGAAUUGACACUGAAGCCCC____CACCGCCUG_________________ .......................(((((.(((((((((((.(((((((......)))))))..))))))))))).)))))........................................ (-16.10 = -16.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:33 2006