Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,265,079 – 6,265,172 |
Length | 93 |
Max. P | 0.996086 |
Location | 6,265,079 – 6,265,172 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 94.91 |
Mean single sequence MFE | -23.70 |
Consensus MFE | -23.70 |
Energy contribution | -23.70 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.31 |
Structure conservation index | 1.00 |
SVM decision value | 2.65 |
SVM RNA-class probability | 0.996086 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6265079 93 - 27905053 UUUUAUUUAUAUUUUCGUUUUAUUUCAUUUUUUUUUUUUCUUGUGCGCCGUGAACAUCGCGGGGUGCAAAAGGUUGCGAAAUUGCGACUUGUU ........................................(((..(.(((((.....))))).)..))).((((((((....))))))))... ( -23.70) >DroSec_CAF1 30373 87 - 1 UUUUAUUUAUAUUUUCGUUUUAUUUCAUUU------UUUCUUGUGCGCCGUGAACCUCGCGGGGUGCAAAAGGUUGCGAAAUUGCGACUUGUU ..............................------....(((..(.(((((.....))))).)..))).((((((((....))))))))... ( -23.70) >DroSim_CAF1 31589 89 - 1 UUUUAUUUAUAUUUUCGUUUUAUUUCAUUUU----UUUUCUUGUGCGCCGUGAACCUCGCGGGGUGCAAAAGGUUGCGAAAUUGCGACUUGUU ...............................----.....(((..(.(((((.....))))).)..))).((((((((....))))))))... ( -23.70) >consensus UUUUAUUUAUAUUUUCGUUUUAUUUCAUUUU____UUUUCUUGUGCGCCGUGAACCUCGCGGGGUGCAAAAGGUUGCGAAAUUGCGACUUGUU ........................................(((..(.(((((.....))))).)..))).((((((((....))))))))... (-23.70 = -23.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:31 2006