Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,263,566 – 6,263,664 |
Length | 98 |
Max. P | 0.661758 |
Location | 6,263,566 – 6,263,664 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 84.04 |
Mean single sequence MFE | -29.57 |
Consensus MFE | -24.49 |
Energy contribution | -25.24 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.12 |
Mean z-score | -1.67 |
Structure conservation index | 0.83 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.661758 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6263566 98 + 27905053 ------------CGAUUCCCUGCCUGCUGUUCUGUCACGUUUCCUGGCCAAGGAC-----UCGCAAACUUGUGCCCGGGACGAAAUGCAUUUGCAAUUGCAUAAAUGAAUAGCAU ------------............((((((((.....((((.((.(((((((...-----.......)))).))).))))))..(((((........)))))....)))))))). ( -30.10) >DroPse_CAF1 25510 85 + 1 ------------------------UCCUGCUCCGUCACGUUUCCUUGGCUGGAGC-----UCGCAA-CUUUGGCCGAGGACGAAAUGCAUUUGCAAUUGCAUAAAUGAACAGUGU ------------------------..(((.((.....((..((((((((..(((.-----......-)))..))))))))))..(((((........)))))....)).)))... ( -27.30) >DroSec_CAF1 28833 98 + 1 ------------CGACUCCCUGCCUGCUGUUCUGUCACGUUUCCUGGCCAAGGAC-----UCGCAAACUUGUGCCCGGGACGAAAUGCAUUUGCAAUUGCAUAAAUGAAUAGCAU ------------............((((((((.....((((.((.(((((((...-----.......)))).))).))))))..(((((........)))))....)))))))). ( -30.10) >DroSim_CAF1 30073 98 + 1 ------------CGAUUCCCUGCCUGCUGUUCUGUCACGUUUCCUGGCCAAGGAC-----UCGCAAACUUGUGCCCGGGACGAAAUGCAUUUGCAAUUGCAUAAAUGAAUAGCAU ------------............((((((((.....((((.((.(((((((...-----.......)))).))).))))))..(((((........)))))....)))))))). ( -30.10) >DroEre_CAF1 34494 104 + 1 CGAUUC------CGAUUCCCUGCCUGCUGUUCUGUCACGUUUCCUGGCCAAGGAC-----UCGCAAACUUGUGCCCGGGACGAAAUGCAUUUGCAAUUGCAUAAAUGAAUAGCAU ......------............((((((((.....((((.((.(((((((...-----.......)))).))).))))))..(((((........)))))....)))))))). ( -30.10) >DroYak_CAF1 30325 115 + 1 CGAUUCCGAUUCCGAUUCCCUGCCUGCUGUUCUGUCACGUUUCCUGGCCAAGGACUCGACUCGCAAACUUGUGCCCGGGACGAAAUGCAUUUGCAAUUGCAUAAAUGAAUAGCAU ........................((((((((.....((((.((.(((((((....((...))....)))).))).))))))..(((((........)))))....)))))))). ( -29.70) >consensus ____________CGAUUCCCUGCCUGCUGUUCUGUCACGUUUCCUGGCCAAGGAC_____UCGCAAACUUGUGCCCGGGACGAAAUGCAUUUGCAAUUGCAUAAAUGAAUAGCAU ........................((((((((.....((((.((.(((((((...............)))).))).))))))..(((((........)))))....)))))))). (-24.49 = -25.24 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:30 2006