Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,263,441 – 6,263,543 |
Length | 102 |
Max. P | 0.948945 |
Location | 6,263,441 – 6,263,543 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 85.60 |
Mean single sequence MFE | -18.62 |
Consensus MFE | -16.95 |
Energy contribution | -16.77 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.06 |
Mean z-score | -1.99 |
Structure conservation index | 0.91 |
SVM decision value | 1.39 |
SVM RNA-class probability | 0.948945 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6263441 102 + 27905053 UCCUCUACUUCUCUACUACUCUACUCCUAGCUCCCAGCUCCUUUGCUUCUUUGCUCCUUGUUCCCAUUUUGCAGUGCAUAAAGUUUUAUCGCUGUCGGGAGA .......................((((((((....(((......))).....)))...............((((((.((((....)))))))))).))))). ( -18.90) >DroSec_CAF1 28705 102 + 1 UCCUCUACUCCUCUUCUACUCUACUCCUAGCUCCCAGCUCCUUUGCUUCUUUGCUCCUUGUUCCCAUUUUGCAGUGCAUAAAGUUUUAUCGCUGUCGGGAGA .......................((((((((....(((......))).....)))...............((((((.((((....)))))))))).))))). ( -18.90) >DroEre_CAF1 34364 101 + 1 UCCCCUAUUCCUCUACCCC-GAGUUCCAAGUUCCCAGCUCCUUUGCUCCUUUGCUCCUUGUUCCCAUUUUGCAGUGCAUAAAGUUUUAUCGCUGUCGGGAGA ((((...............-((((...(((.....(((......))).))).))))..............((((((.((((....)))))))))).)))).. ( -17.90) >DroYak_CAF1 30206 86 + 1 UUCUCGACUCCUCUAC--------UCCAAGCUCCCAGCUCCUU--------UGCUCCUUGUUCCCAUUUUGCAGUGCAUAAAGUUUUAUCGCUGUCGGGAGA ................--------......((((((((.....--------.)))...............((((((.((((....)))))))))).))))). ( -18.80) >consensus UCCUCUACUCCUCUACUAC_CUACUCCAAGCUCCCAGCUCCUUUGCUUCUUUGCUCCUUGUUCCCAUUUUGCAGUGCAUAAAGUUUUAUCGCUGUCGGGAGA ..............................((((((((..............)))...............((((((.((((....)))))))))).))))). (-16.95 = -16.77 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:29 2006