Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,258,746 – 6,258,838 |
Length | 92 |
Max. P | 0.990576 |
Location | 6,258,746 – 6,258,838 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 73.26 |
Mean single sequence MFE | -22.76 |
Consensus MFE | -14.15 |
Energy contribution | -14.15 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.28 |
Structure conservation index | 0.62 |
SVM decision value | 2.22 |
SVM RNA-class probability | 0.990576 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6258746 92 + 27905053 CCCCUUCUUUUUU-----------UUCCAAGCUCAUGCGGCGAAAUUUGUUCAGUUUUCGCUGCAAAGAAAAAUCAAAAUCUCUGCACUGAGGGGAAAAUAAC ...........((-----------((((.......((((((((((..........))))))))))..............((((......)))))))))).... ( -23.20) >DroVir_CAF1 23277 72 + 1 CCCCUUUAG------------------CUGAGGCAUGCGGCGAAAUUUGUAAAUUUUUCGCUGCAAAACAAAAAGAAAAAUUCUUUGCUG------------- .........------------------....(((.((((((((((..(....)..))))))))))......(((((.....)))))))).------------- ( -19.40) >DroSec_CAF1 24004 96 + 1 CCCCUUCUUUUUUUAUU-------UGCCAAACUCAUGCGGCGAAAUGUGUUCAGUUUUCGCUGCACAGCAAAAUCAAAAUAUAUGCACUGAGGGGAAAAUUAC .((((((..........-------...........((((((((((..........))))))))))..(((.............)))...))))))........ ( -24.52) >DroSim_CAF1 25048 96 + 1 CCCCUUCUUUUUUUAUU-------UGCCAAGCUCAUGCGGCGAAAUUUGUUCAGUUUUCGCUGCAAAGCAAAAUCAAAAUAUAUGCACUGAGGGGAAAAUUAC ((((((.......((((-------(.....(((..((((((((((..........)))))))))).))).......)))))........))))))........ ( -26.66) >DroEre_CAF1 29568 91 + 1 CCCCUUCUUUUUU-----------UGGCGAACUCAUGCGGCGAAAUUUGUUCUGUUUUCGCUGCAAAACAAUAUCAAAAUGUCUUUACUGAGCGGCAA-AUGC ...........((-----------((.((..((((((((((((((..........))))))))))..(((.........)))......)))))).)))-)... ( -20.40) >DroYak_CAF1 25354 103 + 1 CUCCUCCUAUUUUUGCUUUUUUCGUGGCGAACUCAUGCGGCGAAAUUUGUUCAGUUUUCGCUGCAAAACAAAUUCAAAAUCUCUUCACUGAGCGGCAAAAUGC ..........(((((((.(((..((((.(....).((((((((((..........))))))))))...................)))).))).)))))))... ( -22.40) >consensus CCCCUUCUUUUUU___________UGCCAAACUCAUGCGGCGAAAUUUGUUCAGUUUUCGCUGCAAAACAAAAUCAAAAUAUCUGCACUGAGGGGAAAAUUAC ...................................((((((((((..........))))))))))...................................... (-14.15 = -14.15 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:26 2006