| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,252,653 – 6,252,743 |
| Length | 90 |
| Max. P | 0.523000 |
| Location | 6,252,653 – 6,252,743 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 83.36 |
| Mean single sequence MFE | -26.53 |
| Consensus MFE | -18.11 |
| Energy contribution | -18.17 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.68 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.523000 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6252653 90 + 27905053 GGCGGAAGUGGCGCAUGCAAAGUGCAAAAGCUCGUUGAAUAUGACCGGGCAUUAAAGAUGC-CAUAACCGUGUGUGAGCGCCCCUUUUCGU .(((((((.(((((((.....))))....(((((....(((((....((((((...)))))-).....))))).)))))))).).)))))) ( -30.50) >DroPse_CAF1 13830 80 + 1 AGCGGAAGUGGCGCAUGCAAAGUGCAAAAGCUCGUUGAAUACAGCCUGGCAUUAAAGAUGC-CAUAACCGUGUGUGUGUGU---------- .((....)).(((((((((..((......(((.((.....))))).(((((((...)))))-))..))..)))))))))..---------- ( -24.30) >DroSim_CAF1 19005 90 + 1 GGCGGAAGUGGCGCAUGCAAAGUGCAAAAGCUCGUUGAAUAUGACCGGGCAUUAAAGAUGC-CAUAACCGUGUGUGAGCGCCCCUUUUCCU ((.(((((.(((((((.....))))....(((((....(((((....((((((...)))))-).....))))).)))))))).))))))). ( -30.70) >DroEre_CAF1 23489 89 + 1 GGCGGAAGUGGCGCAUGCAAAGUGCAAAAGCUCGUUGAAUAUGACCGGGCAUUAAAGAUGC-CAUAACCGUGUGUGUGCGCC-CUCUUCGU .(((((((.(((((((((...(.((....)).).....(((((....((((((...)))))-).....))))))))))))))-)).))))) ( -32.00) >DroYak_CAF1 19013 73 + 1 GGCGGAAGUGGCGCAUGCAAAGUGCAAAAGCUCGUUGAAUAUGACCGGGCAUUAAAGAUGC-CAUAACCGUGUG----------------- .((((..(((((((((.....))))....(((((((......)).))))).........))-)))..))))...----------------- ( -24.40) >DroPer_CAF1 13803 75 + 1 AGCGGAAGUGGCACAUGCAAAGUGCAAAAGCUCGUUGAAUACAGCCUGGCCUUAAAGAUGCCCAUAACCGUGUU------U---------- .((((..(((((((.(((.....)))...(((.((((....))))..)))......).)).))))..))))...------.---------- ( -17.30) >consensus GGCGGAAGUGGCGCAUGCAAAGUGCAAAAGCUCGUUGAAUAUGACCGGGCAUUAAAGAUGC_CAUAACCGUGUGUG_GCGC__________ .((((..(((((((((.....))))....(((((((......)).))))).........)).)))..)))).................... (-18.11 = -18.17 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:25 2006