Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,251,326 – 6,251,428 |
Length | 102 |
Max. P | 0.995956 |
Location | 6,251,326 – 6,251,428 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 76.77 |
Mean single sequence MFE | -28.30 |
Consensus MFE | -20.78 |
Energy contribution | -20.18 |
Covariance contribution | -0.60 |
Combinations/Pair | 1.31 |
Mean z-score | -2.49 |
Structure conservation index | 0.73 |
SVM decision value | 2.64 |
SVM RNA-class probability | 0.995956 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6251326 102 - 27905053 CCUACAAUGCCAUAAAGUUGCGGCUAGCUUUUUAUUAUAUGUAACUAGUAAUUUUCUAAGUGUAGCUAUAGUUGCACUUGGAUUGCCAGCGAAGAAUACUUA .................(((((((..(((..((((.....))))..))).....((((((((((((....))))))))))))..))).)))).......... ( -26.60) >DroSec_CAF1 16535 102 - 1 CUUAGAAUGCCAUAAAGUUGCGGCUAGCUUUUUAUUAUAUGUAACUAGUAAUUCUCUGAGUGUAGCUAUAGUUGCACUUAGAUUGCCAGCGAAGAAUCCUUA .................(((((((..(((..((((.....))))..))).....((((((((((((....))))))))))))..))).)))).......... ( -26.90) >DroSim_CAF1 17671 102 - 1 CUUACAAUGACAUAAAGUUGCGGCUAGCUUUUUAUUGUAUGUAACUAGUAAUUCUCUGAGUGUAGCUAUAGUUGCACUUGGAUUGCCAGCGAAGAAUCCUUA .................(((((((..(((..((((.....))))..))).....((..((((((((....))))))))..))..))).)))).......... ( -26.00) >DroEre_CAF1 21897 98 - 1 ----CAAUGACAUUAACCUGCGGCUGGUUAAUUGCUUGAUUUGGUUAGUUAUUCGCCCAGUGUAGCAAUAGUUGCACUUGGAUAGCUGGCGAAGAAUCCGCA ----.......(((((((.......)))))))(((..(((((.((((((((((((...((((((((....))))))))))))))))))))...))))).))) ( -32.60) >DroYak_CAF1 17306 87 - 1 ---------------CUCUGCGGCUAGUUAAUUAUCGGAUGUGGGUAGUUAUUCUCUAAGUGUAGCAAUAGUUGCACUUGGAUUGCUGGCGAGGAAUCCUUA ---------------.......((((((((((((((.......))))))))...((((((((((((....))))))))))))..))))))((((...)))). ( -29.40) >consensus C_UACAAUGACAUAAAGUUGCGGCUAGCUUUUUAUUAUAUGUAACUAGUAAUUCUCUAAGUGUAGCUAUAGUUGCACUUGGAUUGCCAGCGAAGAAUCCUUA .................(((((((..(((..((((.....))))..))).....((((((((((((....))))))))))))..))).)))).......... (-20.78 = -20.18 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:24 2006