| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,249,749 – 6,249,840 |
| Length | 91 |
| Max. P | 0.956751 |
| Location | 6,249,749 – 6,249,840 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 79.37 |
| Mean single sequence MFE | -25.72 |
| Consensus MFE | -17.44 |
| Energy contribution | -17.30 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.68 |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.956751 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6249749 91 + 27905053 UGG-GCCCU----GGUGGGCGUGCCUCUUAGCAAUAAUAACGUCCUC-GGUUGGCCAUAAAACAAAUCAUGCAAGUUUAUGGUCACCUUACCUA-------------------C-AU (((-(....----.(.((((((.....(((....)))..)))))).)-(((.(((((((((.((.....))....))))))))))))...))))-------------------.-.. ( -24.60) >DroVir_CAF1 12631 99 + 1 -UC-GGUGA----UGUGGGCGUGCCUUUUAGCAAUAAUAACGUCCUC-GGUUGGCCAUAAAACAAAUCAUACAACUUUAUGGUCACCUUACCAAU----------ACCUUCUGC-AA -..-(((((----.(.((((((.....(((....)))..)))))).)-(((.(((((((((..............)))))))))))))))))...----------.........-.. ( -27.74) >DroWil_CAF1 18469 86 + 1 ------GCA----UGUGGGCGUGCCUUUUAGCAAUAAUAACGUCCUU-UGUUGGCCAUAAAACAAAUCAUACAAGUUUAUGGUCACCUUACCUA-------------------C-AU ------(((----...((((((.....(((....)))..))))))..-)))((((((((((..............)))))))))).........-------------------.-.. ( -19.74) >DroMoj_CAF1 20638 111 + 1 UUC-GGCAU----UGUGGGCGUGCCUUUUAGCAAUAAUAACGUCCUC-UGUUGGCCAUAAAACAAAUCAUACAACUUUAUGGUCACCUUACCAAUUCCAAUGACCACCUUCUGCCAA ...-(((((----((.((((((.....(((....)))..))))))..-...((((((((((..............))))))))))............))))).))............ ( -25.94) >DroAna_CAF1 22989 97 + 1 CGGAGUCCUGCUCGGAGGGCGUGCCUUUUAGCAAUAAUAACGUCCUCCUGCUGGCCAUAAAACAAAUCAUACAAGUUUAUGGCCACCUUGCCUA-------------------C-AU .((......((..(((((((((.....(((....)))..))))))))).))((((((((((..............)))))))))))).......-------------------.-.. ( -32.24) >DroPer_CAF1 11037 89 + 1 --G-GUCUA----UGUGGGCGUGCCUUUUAGCAAUAAUAACGUCCUC-GGUUGGCCAUAAAACAAAUCAUACAAGUUUAUGGUCACCUUACCUA-------------------C-AU --(-((...----.(.((((((.....(((....)))..)))))).)-(((.(((((((((..............))))))))))))..)))..-------------------.-.. ( -24.04) >consensus __G_GGCCA____UGUGGGCGUGCCUUUUAGCAAUAAUAACGUCCUC_GGUUGGCCAUAAAACAAAUCAUACAAGUUUAUGGUCACCUUACCUA___________________C_AU ................((((((.................))))))......((((((((((..............))))))))))................................ (-17.44 = -17.30 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:23 2006