Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,245,340 – 6,245,431 |
Length | 91 |
Max. P | 0.837869 |
Location | 6,245,340 – 6,245,431 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 77.43 |
Mean single sequence MFE | -27.60 |
Consensus MFE | -18.41 |
Energy contribution | -17.55 |
Covariance contribution | -0.86 |
Combinations/Pair | 1.22 |
Mean z-score | -1.54 |
Structure conservation index | 0.67 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.837869 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6245340 91 + 27905053 UACUGGGUCCUUCGGCUGCCUGCGGUGU--UUGCUGGUAAUUUUCAUUGUCACGUGGCGGUAAUUACCGGUGUUGC-AGACACAAACACAGAUG ..((((((.(....)..)))....((((--((((((((((((...((((((....)))))))))))))).....))-)))))).....)))... ( -27.70) >DroPse_CAF1 6348 85 + 1 UCGUAG------UGGGUGCCUGCGGUGU--UUGCUGGUAAUUUCCAUUGUCACGUGGCGGUAAUUACCGGUGUUGC-AGACACAAACGCAGACA .....(------((.(((.((((((...--.(((((((((((...((((((....)))))))))))))))))))))-)).)))...)))..... ( -28.80) >DroWil_CAF1 12017 91 + 1 UACGGGU---UGGGACUGCCUGUGGUGUUUUUGCUGGUAAUUUUCAUUGUCACGUGGUGGUAAUUACCGGUGUUGCCAGACGCACACAUACACG (((((((---.......)))))))((((....((((((((((.((((..(...)..)))).))))))))))(((((.....))).))..)))). ( -28.60) >DroMoj_CAF1 15754 69 + 1 ----------------------CUGUGU--UGCCUGGUAAUUUUCAUUGUCACGUGGCAGUAAUUACCGGUGUUGC-AGACGCACACACAGACA ----------------------((((((--((((((((((((...((((((....))))))))))))))).(((..-.)))))).))))))... ( -24.10) >DroAna_CAF1 18255 85 + 1 ------CUCGCCAGUCUGCCUGCGGUGU--CGGCUGGUAAUUUUCAUUGUCACGUGGCGGUAAUUACCGGUGUUGC-AGACACAAACACAGACC ------.......(((((......((((--(.((((((((((...((((((....)))))))))))))))).....-.))))).....))))). ( -27.40) >DroPer_CAF1 6249 85 + 1 UCGUAG------UGGCUGCCUGCGGUGU--UUGCUGGUAAUUUCCAUUGUCACGUGGCGGUAAUUACCGGUGUUGC-AGACACAAACGCAGACA ..((((------...))))(((((((((--((((((((((((...((((((....)))))))))))))).....))-))))))...)))))... ( -29.00) >consensus U__U_G______UGGCUGCCUGCGGUGU__UUGCUGGUAAUUUUCAUUGUCACGUGGCGGUAAUUACCGGUGUUGC_AGACACAAACACAGACA ........................((((......((((((((...((((((....))))))))))))))(((((....)))))..))))..... (-18.41 = -17.55 + -0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:21 2006